Experiment: p-Coumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05398 and H281DRAFT_05399 are separated by 330 nucleotides H281DRAFT_05399 and H281DRAFT_05400 are separated by 1 nucleotides H281DRAFT_05400 and H281DRAFT_05401 are separated by 12 nucleotides
H281DRAFT_05398: H281DRAFT_05398 - hypothetical protein, at 161,142 to 161,540
_05398
H281DRAFT_05399: H281DRAFT_05399 - isoquinoline 1-oxidoreductase, alpha subunit, at 161,871 to 162,326
_05399
H281DRAFT_05400: H281DRAFT_05400 - isoquinoline 1-oxidoreductase, beta subunit, at 162,328 to 164,577
_05400
H281DRAFT_05401: H281DRAFT_05401 - Cytochrome c, mono- and diheme variants, at 164,590 to 165,885
_05401
Position (kb) 162
163
164
165 Strain fitness (log2 ratio) -2
-1
0
1 at 161.478 kb on - strand, within H281DRAFT_05398 at 161.654 kb on + strand at 161.654 kb on + strand at 161.655 kb on - strand at 161.885 kb on + strand at 161.904 kb on - strand at 162.046 kb on + strand at 162.279 kb on + strand, within H281DRAFT_05399 at 162.280 kb on - strand, within H281DRAFT_05399 at 162.280 kb on - strand at 162.601 kb on - strand, within H281DRAFT_05400 at 162.784 kb on + strand, within H281DRAFT_05400 at 163.233 kb on + strand, within H281DRAFT_05400 at 163.234 kb on - strand, within H281DRAFT_05400 at 163.234 kb on - strand, within H281DRAFT_05400 at 163.470 kb on + strand, within H281DRAFT_05400 at 163.724 kb on - strand, within H281DRAFT_05400 at 163.735 kb on + strand, within H281DRAFT_05400 at 163.736 kb on - strand, within H281DRAFT_05400 at 163.738 kb on + strand, within H281DRAFT_05400 at 163.738 kb on + strand, within H281DRAFT_05400 at 163.739 kb on - strand, within H281DRAFT_05400 at 163.892 kb on - strand, within H281DRAFT_05400 at 164.183 kb on - strand, within H281DRAFT_05400 at 164.403 kb on + strand at 164.713 kb on + strand at 164.812 kb on + strand, within H281DRAFT_05401 at 164.812 kb on + strand, within H281DRAFT_05401 at 164.813 kb on - strand, within H281DRAFT_05401 at 164.857 kb on + strand, within H281DRAFT_05401 at 165.300 kb on + strand, within H281DRAFT_05401 at 165.300 kb on + strand, within H281DRAFT_05401 at 165.301 kb on - strand, within H281DRAFT_05401 at 165.455 kb on - strand, within H281DRAFT_05401 at 165.499 kb on + strand, within H281DRAFT_05401 at 165.569 kb on - strand, within H281DRAFT_05401 at 165.577 kb on + strand, within H281DRAFT_05401
Per-strain Table
Position Strand Gene LocusTag Fraction p-Coumaric (C) remove 161,478 - H281DRAFT_05398 0.84 +0.1 161,654 + +0.7 161,654 + +0.7 161,655 - -1.4 161,885 + -1.9 161,904 - -1.6 162,046 + -0.8 162,279 + H281DRAFT_05399 0.89 -1.4 162,280 - H281DRAFT_05399 0.90 +0.1 162,280 - +1.4 162,601 - H281DRAFT_05400 0.12 -1.1 162,784 + H281DRAFT_05400 0.20 -1.2 163,233 + H281DRAFT_05400 0.40 -2.7 163,234 - H281DRAFT_05400 0.40 -0.5 163,234 - H281DRAFT_05400 0.40 -0.7 163,470 + H281DRAFT_05400 0.51 -1.3 163,724 - H281DRAFT_05400 0.62 -1.2 163,735 + H281DRAFT_05400 0.63 -1.1 163,736 - H281DRAFT_05400 0.63 -1.0 163,738 + H281DRAFT_05400 0.63 -1.4 163,738 + H281DRAFT_05400 0.63 -1.2 163,739 - H281DRAFT_05400 0.63 -1.1 163,892 - H281DRAFT_05400 0.70 -1.4 164,183 - H281DRAFT_05400 0.82 -0.9 164,403 + -1.4 164,713 + -1.3 164,812 + H281DRAFT_05401 0.17 -1.2 164,812 + H281DRAFT_05401 0.17 -1.0 164,813 - H281DRAFT_05401 0.17 -0.5 164,857 + H281DRAFT_05401 0.21 -1.3 165,300 + H281DRAFT_05401 0.55 +0.3 165,300 + H281DRAFT_05401 0.55 -0.9 165,301 - H281DRAFT_05401 0.55 +0.2 165,455 - H281DRAFT_05401 0.67 -0.8 165,499 + H281DRAFT_05401 0.70 -0.3 165,569 - H281DRAFT_05401 0.76 -0.3 165,577 + H281DRAFT_05401 0.76 +0.6
Or see this region's nucleotide sequence