Experiment: p-Coumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04973 and H281DRAFT_04974 are separated by 336 nucleotides H281DRAFT_04974 and H281DRAFT_04975 are separated by 119 nucleotides
H281DRAFT_04973: H281DRAFT_04973 - Excinuclease ABC subunit B, at 155,788 to 157,881
_04973
H281DRAFT_04974: H281DRAFT_04974 - aromatic-amino-acid transaminase, at 158,218 to 159,417
_04974
H281DRAFT_04975: H281DRAFT_04975 - NTE family protein, at 159,537 to 160,775
_04975
Position (kb) 158
159
160 Strain fitness (log2 ratio) -2
-1
0
1 at 157.278 kb on - strand, within H281DRAFT_04973 at 157.383 kb on - strand, within H281DRAFT_04973 at 157.464 kb on + strand, within H281DRAFT_04973 at 157.465 kb on - strand, within H281DRAFT_04973 at 157.517 kb on + strand, within H281DRAFT_04973 at 157.517 kb on + strand, within H281DRAFT_04973 at 157.518 kb on - strand, within H281DRAFT_04973 at 157.518 kb on - strand, within H281DRAFT_04973 at 157.518 kb on - strand, within H281DRAFT_04973 at 157.533 kb on - strand, within H281DRAFT_04973 at 157.536 kb on - strand, within H281DRAFT_04973 at 157.541 kb on + strand, within H281DRAFT_04973 at 157.542 kb on - strand, within H281DRAFT_04973 at 157.545 kb on - strand, within H281DRAFT_04973 at 157.545 kb on - strand, within H281DRAFT_04973 at 157.556 kb on + strand, within H281DRAFT_04973 at 157.797 kb on - strand at 157.917 kb on - strand at 158.005 kb on + strand at 158.035 kb on + strand at 158.035 kb on + strand at 158.035 kb on + strand at 158.036 kb on - strand at 158.074 kb on + strand at 158.075 kb on - strand at 158.182 kb on + strand at 158.183 kb on - strand at 158.200 kb on + strand at 158.444 kb on - strand, within H281DRAFT_04974 at 158.668 kb on + strand, within H281DRAFT_04974 at 158.668 kb on + strand, within H281DRAFT_04974 at 158.669 kb on - strand, within H281DRAFT_04974 at 158.671 kb on + strand, within H281DRAFT_04974 at 158.728 kb on + strand, within H281DRAFT_04974 at 158.864 kb on - strand, within H281DRAFT_04974 at 159.027 kb on + strand, within H281DRAFT_04974 at 159.326 kb on - strand at 159.326 kb on - strand at 159.366 kb on + strand at 159.704 kb on - strand, within H281DRAFT_04975 at 159.739 kb on + strand, within H281DRAFT_04975 at 159.739 kb on + strand, within H281DRAFT_04975 at 159.890 kb on - strand, within H281DRAFT_04975 at 159.890 kb on - strand, within H281DRAFT_04975 at 160.012 kb on + strand, within H281DRAFT_04975 at 160.012 kb on + strand, within H281DRAFT_04975 at 160.051 kb on + strand, within H281DRAFT_04975 at 160.268 kb on - strand, within H281DRAFT_04975
Per-strain Table
Position Strand Gene LocusTag Fraction p-Coumaric (C) remove 157,278 - H281DRAFT_04973 0.71 -0.2 157,383 - H281DRAFT_04973 0.76 +0.2 157,464 + H281DRAFT_04973 0.80 +0.3 157,465 - H281DRAFT_04973 0.80 -0.2 157,517 + H281DRAFT_04973 0.83 +1.4 157,517 + H281DRAFT_04973 0.83 -0.3 157,518 - H281DRAFT_04973 0.83 +0.1 157,518 - H281DRAFT_04973 0.83 +0.1 157,518 - H281DRAFT_04973 0.83 -0.3 157,533 - H281DRAFT_04973 0.83 -0.1 157,536 - H281DRAFT_04973 0.83 +0.7 157,541 + H281DRAFT_04973 0.84 +0.7 157,542 - H281DRAFT_04973 0.84 -0.1 157,545 - H281DRAFT_04973 0.84 +0.5 157,545 - H281DRAFT_04973 0.84 +0.9 157,556 + H281DRAFT_04973 0.84 -0.3 157,797 - +0.9 157,917 - -1.2 158,005 + -0.0 158,035 + +1.0 158,035 + -0.5 158,035 + +0.1 158,036 - -0.3 158,074 + +1.1 158,075 - +0.2 158,182 + +0.0 158,183 - -1.6 158,200 + +0.5 158,444 - H281DRAFT_04974 0.19 -0.5 158,668 + H281DRAFT_04974 0.38 -0.9 158,668 + H281DRAFT_04974 0.38 -1.5 158,669 - H281DRAFT_04974 0.38 -0.7 158,671 + H281DRAFT_04974 0.38 -2.7 158,728 + H281DRAFT_04974 0.42 -1.7 158,864 - H281DRAFT_04974 0.54 -1.7 159,027 + H281DRAFT_04974 0.67 -1.4 159,326 - -2.4 159,326 - -1.8 159,366 + -0.5 159,704 - H281DRAFT_04975 0.13 +0.3 159,739 + H281DRAFT_04975 0.16 -0.4 159,739 + H281DRAFT_04975 0.16 +0.0 159,890 - H281DRAFT_04975 0.28 +0.2 159,890 - H281DRAFT_04975 0.28 -0.2 160,012 + H281DRAFT_04975 0.38 -0.2 160,012 + H281DRAFT_04975 0.38 -0.2 160,051 + H281DRAFT_04975 0.41 -0.0 160,268 - H281DRAFT_04975 0.59 -0.3
Or see this region's nucleotide sequence