Experiment: p-Coumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04850 and H281DRAFT_04851 are separated by 5 nucleotides H281DRAFT_04851 and H281DRAFT_04852 are separated by 392 nucleotides
H281DRAFT_04850: H281DRAFT_04850 - UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase, at 292,410 to 293,435
_04850
H281DRAFT_04851: H281DRAFT_04851 - NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC, at 293,441 to 295,324
_04851
H281DRAFT_04852: H281DRAFT_04852 - hypothetical protein, at 295,717 to 297,549
_04852
Position (kb) 293
294
295
296 Strain fitness (log2 ratio) -2
-1
0
1
2 at 293.148 kb on - strand, within H281DRAFT_04850 at 293.209 kb on - strand, within H281DRAFT_04850 at 293.209 kb on - strand, within H281DRAFT_04850 at 293.209 kb on - strand, within H281DRAFT_04850 at 293.263 kb on - strand, within H281DRAFT_04850 at 293.431 kb on + strand at 293.431 kb on + strand at 293.431 kb on + strand at 293.526 kb on - strand at 293.636 kb on + strand, within H281DRAFT_04851 at 293.843 kb on + strand, within H281DRAFT_04851 at 293.974 kb on + strand, within H281DRAFT_04851 at 294.005 kb on + strand, within H281DRAFT_04851 at 294.066 kb on - strand, within H281DRAFT_04851 at 294.348 kb on + strand, within H281DRAFT_04851 at 294.431 kb on + strand, within H281DRAFT_04851 at 294.486 kb on + strand, within H281DRAFT_04851 at 294.506 kb on + strand, within H281DRAFT_04851 at 294.539 kb on + strand, within H281DRAFT_04851 at 294.540 kb on - strand, within H281DRAFT_04851 at 294.608 kb on + strand, within H281DRAFT_04851 at 294.609 kb on - strand, within H281DRAFT_04851 at 295.028 kb on - strand, within H281DRAFT_04851 at 295.322 kb on + strand at 295.322 kb on + strand at 295.322 kb on + strand at 295.323 kb on - strand at 295.323 kb on - strand at 295.434 kb on - strand at 295.434 kb on - strand at 295.434 kb on - strand at 295.434 kb on - strand at 295.434 kb on - strand at 295.456 kb on - strand at 295.463 kb on - strand at 295.463 kb on - strand at 295.538 kb on - strand at 295.538 kb on - strand at 295.605 kb on - strand at 295.746 kb on - strand at 295.802 kb on + strand at 295.803 kb on - strand at 295.822 kb on + strand at 295.822 kb on + strand at 295.822 kb on + strand at 295.823 kb on - strand at 295.867 kb on + strand at 295.867 kb on + strand at 295.868 kb on - strand at 295.870 kb on - strand at 295.933 kb on + strand, within H281DRAFT_04852 at 295.980 kb on - strand, within H281DRAFT_04852 at 295.980 kb on - strand, within H281DRAFT_04852 at 296.014 kb on + strand, within H281DRAFT_04852 at 296.014 kb on + strand, within H281DRAFT_04852 at 296.028 kb on + strand, within H281DRAFT_04852 at 296.029 kb on - strand, within H281DRAFT_04852 at 296.088 kb on + strand, within H281DRAFT_04852 at 296.088 kb on + strand, within H281DRAFT_04852 at 296.089 kb on - strand, within H281DRAFT_04852 at 296.092 kb on + strand, within H281DRAFT_04852 at 296.092 kb on + strand, within H281DRAFT_04852 at 296.092 kb on + strand, within H281DRAFT_04852 at 296.092 kb on + strand, within H281DRAFT_04852 at 296.093 kb on - strand, within H281DRAFT_04852 at 296.093 kb on - strand, within H281DRAFT_04852 at 296.093 kb on - strand, within H281DRAFT_04852 at 296.190 kb on + strand, within H281DRAFT_04852 at 296.190 kb on + strand, within H281DRAFT_04852 at 296.192 kb on + strand, within H281DRAFT_04852 at 296.193 kb on - strand, within H281DRAFT_04852 at 296.193 kb on - strand, within H281DRAFT_04852
Per-strain Table
Position Strand Gene LocusTag Fraction p-Coumaric (C) remove 293,148 - H281DRAFT_04850 0.72 +0.5 293,209 - H281DRAFT_04850 0.78 -0.3 293,209 - H281DRAFT_04850 0.78 -1.2 293,209 - H281DRAFT_04850 0.78 +1.1 293,263 - H281DRAFT_04850 0.83 -0.1 293,431 + -1.1 293,431 + -1.1 293,431 + +0.5 293,526 - -0.9 293,636 + H281DRAFT_04851 0.10 -2.3 293,843 + H281DRAFT_04851 0.21 -0.9 293,974 + H281DRAFT_04851 0.28 -1.4 294,005 + H281DRAFT_04851 0.30 +1.8 294,066 - H281DRAFT_04851 0.33 -2.6 294,348 + H281DRAFT_04851 0.48 -0.7 294,431 + H281DRAFT_04851 0.53 -1.1 294,486 + H281DRAFT_04851 0.55 -0.4 294,506 + H281DRAFT_04851 0.57 -0.2 294,539 + H281DRAFT_04851 0.58 -1.2 294,540 - H281DRAFT_04851 0.58 -0.3 294,608 + H281DRAFT_04851 0.62 -1.6 294,609 - H281DRAFT_04851 0.62 -0.3 295,028 - H281DRAFT_04851 0.84 -2.2 295,322 + +0.5 295,322 + +0.1 295,322 + -2.0 295,323 - +0.4 295,323 - +0.4 295,434 - +0.2 295,434 - +0.4 295,434 - -0.2 295,434 - +0.1 295,434 - +0.2 295,456 - -0.1 295,463 - -0.1 295,463 - +0.7 295,538 - +0.4 295,538 - -0.1 295,605 - +0.0 295,746 - +0.5 295,802 + +0.2 295,803 - -0.1 295,822 + -0.1 295,822 + +1.4 295,822 + +0.2 295,823 - +0.0 295,867 + +0.1 295,867 + +0.6 295,868 - +1.4 295,870 - -0.0 295,933 + H281DRAFT_04852 0.12 +0.2 295,980 - H281DRAFT_04852 0.14 +0.7 295,980 - H281DRAFT_04852 0.14 +0.2 296,014 + H281DRAFT_04852 0.16 +0.4 296,014 + H281DRAFT_04852 0.16 +0.1 296,028 + H281DRAFT_04852 0.17 +0.1 296,029 - H281DRAFT_04852 0.17 +0.4 296,088 + H281DRAFT_04852 0.20 -0.4 296,088 + H281DRAFT_04852 0.20 +0.3 296,089 - H281DRAFT_04852 0.20 -0.5 296,092 + H281DRAFT_04852 0.20 +0.0 296,092 + H281DRAFT_04852 0.20 +0.2 296,092 + H281DRAFT_04852 0.20 +0.0 296,092 + H281DRAFT_04852 0.20 +0.2 296,093 - H281DRAFT_04852 0.21 +0.8 296,093 - H281DRAFT_04852 0.21 +0.8 296,093 - H281DRAFT_04852 0.21 +1.0 296,190 + H281DRAFT_04852 0.26 -0.1 296,190 + H281DRAFT_04852 0.26 +0.1 296,192 + H281DRAFT_04852 0.26 -0.4 296,193 - H281DRAFT_04852 0.26 +0.2 296,193 - H281DRAFT_04852 0.26 -0.2
Or see this region's nucleotide sequence