Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04727

Experiment: p-Coumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04726 and H281DRAFT_04727 are separated by 6 nucleotidesH281DRAFT_04727 and H281DRAFT_04728 are separated by 203 nucleotidesH281DRAFT_04728 and H281DRAFT_04729 overlap by 4 nucleotides H281DRAFT_04726: H281DRAFT_04726 - serine hydroxymethyltransferase, at 137,136 to 138,383 _04726 H281DRAFT_04727: H281DRAFT_04727 - transcriptional repressor NrdR, at 138,390 to 138,872 _04727 H281DRAFT_04728: H281DRAFT_04728 - type IV fimbrial biogenesis protein FimT, at 139,076 to 139,636 _04728 H281DRAFT_04729: H281DRAFT_04729 - Tfp pilus assembly protein PilV, at 139,633 to 140,091 _04729 Position (kb) 138 139Strain fitness (log2 ratio) -2 -1 0 1at 138.510 kb on + strand, within H281DRAFT_04727at 138.511 kb on - strand, within H281DRAFT_04727at 138.511 kb on - strand, within H281DRAFT_04727at 138.511 kb on - strand, within H281DRAFT_04727at 138.725 kb on - strand, within H281DRAFT_04727at 138.759 kb on + strand, within H281DRAFT_04727at 138.902 kb on + strandat 138.903 kb on - strandat 138.983 kb on - strandat 139.039 kb on - strandat 139.039 kb on - strandat 139.117 kb on + strandat 139.118 kb on - strandat 139.237 kb on - strand, within H281DRAFT_04728at 139.294 kb on - strand, within H281DRAFT_04728at 139.380 kb on + strand, within H281DRAFT_04728at 139.405 kb on + strand, within H281DRAFT_04728at 139.406 kb on - strand, within H281DRAFT_04728at 139.558 kb on + strand, within H281DRAFT_04728at 139.559 kb on - strand, within H281DRAFT_04728

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Per-strain Table

Position Strand Gene LocusTag Fraction p-Coumaric (C)
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138,510 + H281DRAFT_04727 0.25 -1.7
138,511 - H281DRAFT_04727 0.25 -0.3
138,511 - H281DRAFT_04727 0.25 -2.1
138,511 - H281DRAFT_04727 0.25 -0.6
138,725 - H281DRAFT_04727 0.69 -1.4
138,759 + H281DRAFT_04727 0.76 -1.5
138,902 + -0.1
138,903 - -0.5
138,983 - +1.0
139,039 - +0.6
139,039 - +1.3
139,117 + -0.0
139,118 - -1.1
139,237 - H281DRAFT_04728 0.29 +0.6
139,294 - H281DRAFT_04728 0.39 +1.0
139,380 + H281DRAFT_04728 0.54 -0.8
139,405 + H281DRAFT_04728 0.59 +0.3
139,406 - H281DRAFT_04728 0.59 -0.0
139,558 + H281DRAFT_04728 0.86 -0.0
139,559 - H281DRAFT_04728 0.86 -0.3

Or see this region's nucleotide sequence