Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04707

Experiment: p-Coumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04706 and H281DRAFT_04707 overlap by 4 nucleotidesH281DRAFT_04707 and H281DRAFT_04708 overlap by 8 nucleotidesH281DRAFT_04708 and H281DRAFT_04709 are separated by 71 nucleotides H281DRAFT_04706: H281DRAFT_04706 - poly(A) polymerase, at 118,739 to 120,337 _04706 H281DRAFT_04707: H281DRAFT_04707 - HAD-superfamily subfamily IB hydrolase, TIGR01490, at 120,334 to 121,020 _04707 H281DRAFT_04708: H281DRAFT_04708 - regulatory inactivation of DnaA Hda protein, at 121,013 to 121,756 _04708 H281DRAFT_04709: H281DRAFT_04709 - Predicted PurR-regulated permease PerM, at 121,828 to 122,904 _04709 Position (kb) 120 121 122Strain fitness (log2 ratio) -3 -2 -1 0 1at 119.624 kb on + strand, within H281DRAFT_04706at 119.625 kb on - strand, within H281DRAFT_04706at 119.625 kb on - strand, within H281DRAFT_04706at 119.647 kb on - strand, within H281DRAFT_04706at 119.676 kb on + strand, within H281DRAFT_04706at 119.676 kb on + strand, within H281DRAFT_04706at 119.676 kb on + strand, within H281DRAFT_04706at 119.677 kb on - strand, within H281DRAFT_04706at 119.677 kb on - strand, within H281DRAFT_04706at 119.679 kb on + strand, within H281DRAFT_04706at 119.680 kb on - strand, within H281DRAFT_04706at 119.680 kb on - strand, within H281DRAFT_04706at 119.751 kb on - strand, within H281DRAFT_04706at 119.975 kb on + strand, within H281DRAFT_04706at 119.976 kb on - strand, within H281DRAFT_04706at 120.035 kb on - strand, within H281DRAFT_04706at 120.035 kb on - strand, within H281DRAFT_04706at 120.116 kb on + strand, within H281DRAFT_04706at 120.116 kb on + strand, within H281DRAFT_04706at 120.312 kb on - strandat 120.317 kb on - strandat 120.473 kb on + strand, within H281DRAFT_04707at 120.551 kb on + strand, within H281DRAFT_04707at 120.779 kb on + strand, within H281DRAFT_04707at 120.779 kb on + strand, within H281DRAFT_04707at 120.780 kb on - strand, within H281DRAFT_04707at 120.780 kb on - strand, within H281DRAFT_04707at 120.848 kb on + strand, within H281DRAFT_04707at 120.879 kb on - strand, within H281DRAFT_04707at 120.887 kb on + strand, within H281DRAFT_04707at 120.887 kb on + strand, within H281DRAFT_04707at 120.887 kb on + strandat 120.930 kb on + strand, within H281DRAFT_04707at 121.029 kb on - strandat 121.029 kb on - strandat 121.760 kb on - strandat 121.760 kb on - strandat 121.839 kb on - strandat 121.857 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction p-Coumaric (C)
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119,624 + H281DRAFT_04706 0.55 -0.7
119,625 - H281DRAFT_04706 0.55 -0.6
119,625 - H281DRAFT_04706 0.55 -1.5
119,647 - H281DRAFT_04706 0.57 -1.9
119,676 + H281DRAFT_04706 0.59 -0.7
119,676 + H281DRAFT_04706 0.59 +0.1
119,676 + H281DRAFT_04706 0.59 +1.0
119,677 - H281DRAFT_04706 0.59 -0.9
119,677 - H281DRAFT_04706 0.59 -1.2
119,679 + H281DRAFT_04706 0.59 -0.5
119,680 - H281DRAFT_04706 0.59 -2.3
119,680 - H281DRAFT_04706 0.59 -0.2
119,751 - H281DRAFT_04706 0.63 -2.2
119,975 + H281DRAFT_04706 0.77 -2.7
119,976 - H281DRAFT_04706 0.77 -1.4
120,035 - H281DRAFT_04706 0.81 -1.3
120,035 - H281DRAFT_04706 0.81 -1.5
120,116 + H281DRAFT_04706 0.86 -0.6
120,116 + H281DRAFT_04706 0.86 -1.9
120,312 - -0.6
120,317 - -1.2
120,473 + H281DRAFT_04707 0.20 -2.3
120,551 + H281DRAFT_04707 0.32 -1.6
120,779 + H281DRAFT_04707 0.65 -0.3
120,779 + H281DRAFT_04707 0.65 -2.4
120,780 - H281DRAFT_04707 0.65 -2.9
120,780 - H281DRAFT_04707 0.65 -1.5
120,848 + H281DRAFT_04707 0.75 -3.4
120,879 - H281DRAFT_04707 0.79 -0.9
120,887 + H281DRAFT_04707 0.80 -3.2
120,887 + H281DRAFT_04707 0.80 -1.3
120,887 + -0.5
120,930 + H281DRAFT_04707 0.87 -0.7
121,029 - -0.5
121,029 - -0.1
121,760 - +1.6
121,760 - +0.1
121,839 - -0.1
121,857 - +0.7

Or see this region's nucleotide sequence