Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04542

Experiment: p-Coumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04541 and H281DRAFT_04542 are separated by 67 nucleotidesH281DRAFT_04542 and H281DRAFT_04543 are separated by 11 nucleotidesH281DRAFT_04543 and H281DRAFT_04544 are separated by 257 nucleotides H281DRAFT_04541: H281DRAFT_04541 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 274,568 to 275,314 _04541 H281DRAFT_04542: H281DRAFT_04542 - hypothetical protein, at 275,382 to 275,966 _04542 H281DRAFT_04543: H281DRAFT_04543 - transcriptional regulator, TetR family, at 275,978 to 276,691 _04543 H281DRAFT_04544: H281DRAFT_04544 - diacylglycerol kinase (ATP), at 276,949 to 277,620 _04544 Position (kb) 275 276Strain fitness (log2 ratio) -1 0 1 2at 274.407 kb on - strandat 274.407 kb on - strandat 274.420 kb on + strandat 274.421 kb on - strandat 274.478 kb on + strandat 274.478 kb on + strandat 274.478 kb on + strandat 274.479 kb on - strandat 274.479 kb on - strandat 274.479 kb on - strandat 274.482 kb on + strandat 274.482 kb on + strandat 274.482 kb on + strandat 274.482 kb on + strandat 274.482 kb on + strandat 274.483 kb on - strandat 274.483 kb on - strandat 274.547 kb on + strandat 274.761 kb on - strand, within H281DRAFT_04541at 274.854 kb on + strand, within H281DRAFT_04541at 274.855 kb on - strand, within H281DRAFT_04541at 274.855 kb on - strand, within H281DRAFT_04541at 274.993 kb on + strand, within H281DRAFT_04541at 274.993 kb on + strand, within H281DRAFT_04541at 274.994 kb on - strand, within H281DRAFT_04541at 275.217 kb on + strand, within H281DRAFT_04541at 275.273 kb on + strandat 275.273 kb on + strandat 275.491 kb on + strand, within H281DRAFT_04542at 275.491 kb on + strand, within H281DRAFT_04542at 275.552 kb on - strand, within H281DRAFT_04542at 275.564 kb on + strand, within H281DRAFT_04542at 275.614 kb on + strand, within H281DRAFT_04542at 275.615 kb on - strand, within H281DRAFT_04542at 275.854 kb on + strand, within H281DRAFT_04542at 275.915 kb on - strandat 275.915 kb on - strandat 275.915 kb on - strandat 275.947 kb on + strandat 276.024 kb on + strandat 276.025 kb on - strandat 276.093 kb on + strand, within H281DRAFT_04543at 276.093 kb on + strand, within H281DRAFT_04543at 276.094 kb on - strand, within H281DRAFT_04543at 276.094 kb on - strand, within H281DRAFT_04543at 276.119 kb on + strand, within H281DRAFT_04543at 276.119 kb on + strand, within H281DRAFT_04543at 276.120 kb on - strand, within H281DRAFT_04543at 276.125 kb on + strand, within H281DRAFT_04543at 276.125 kb on + strand, within H281DRAFT_04543at 276.125 kb on + strand, within H281DRAFT_04543at 276.125 kb on + strand, within H281DRAFT_04543at 276.126 kb on - strand, within H281DRAFT_04543at 276.126 kb on - strand, within H281DRAFT_04543at 276.126 kb on - strand, within H281DRAFT_04543at 276.166 kb on - strand, within H281DRAFT_04543at 276.166 kb on - strand, within H281DRAFT_04543at 276.204 kb on + strand, within H281DRAFT_04543at 276.205 kb on - strand, within H281DRAFT_04543at 276.205 kb on - strand, within H281DRAFT_04543at 276.213 kb on - strand, within H281DRAFT_04543at 276.387 kb on + strand, within H281DRAFT_04543at 276.423 kb on + strand, within H281DRAFT_04543at 276.423 kb on + strand, within H281DRAFT_04543at 276.424 kb on - strand, within H281DRAFT_04543at 276.424 kb on - strand, within H281DRAFT_04543at 276.424 kb on - strand, within H281DRAFT_04543at 276.424 kb on - strandat 276.432 kb on + strand, within H281DRAFT_04543at 276.433 kb on - strand, within H281DRAFT_04543at 276.748 kb on - strandat 276.769 kb on + strandat 276.792 kb on - strandat 276.807 kb on + strandat 276.810 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction p-Coumaric (C)
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274,407 - +0.1
274,407 - -0.8
274,420 + +0.4
274,421 - +0.0
274,478 + -0.6
274,478 + +0.6
274,478 + +0.5
274,479 - +0.6
274,479 - -0.3
274,479 - -0.9
274,482 + -0.4
274,482 + -0.6
274,482 + +0.2
274,482 + +0.7
274,482 + +0.7
274,483 - +1.2
274,483 - -0.0
274,547 + +0.3
274,761 - H281DRAFT_04541 0.26 -0.0
274,854 + H281DRAFT_04541 0.38 -0.2
274,855 - H281DRAFT_04541 0.38 -0.1
274,855 - H281DRAFT_04541 0.38 +0.1
274,993 + H281DRAFT_04541 0.57 +0.1
274,993 + H281DRAFT_04541 0.57 +0.2
274,994 - H281DRAFT_04541 0.57 -0.2
275,217 + H281DRAFT_04541 0.87 +0.2
275,273 + +0.0
275,273 + -0.2
275,491 + H281DRAFT_04542 0.19 +0.9
275,491 + H281DRAFT_04542 0.19 +0.4
275,552 - H281DRAFT_04542 0.29 +0.1
275,564 + H281DRAFT_04542 0.31 +1.9
275,614 + H281DRAFT_04542 0.40 -0.2
275,615 - H281DRAFT_04542 0.40 +0.2
275,854 + H281DRAFT_04542 0.81 +1.8
275,915 - +0.2
275,915 - +0.4
275,915 - +0.6
275,947 + +0.6
276,024 + -0.2
276,025 - +0.0
276,093 + H281DRAFT_04543 0.16 -0.3
276,093 + H281DRAFT_04543 0.16 -1.1
276,094 - H281DRAFT_04543 0.16 -0.3
276,094 - H281DRAFT_04543 0.16 -0.9
276,119 + H281DRAFT_04543 0.20 -0.5
276,119 + H281DRAFT_04543 0.20 +1.1
276,120 - H281DRAFT_04543 0.20 +0.6
276,125 + H281DRAFT_04543 0.21 +0.0
276,125 + H281DRAFT_04543 0.21 -0.4
276,125 + H281DRAFT_04543 0.21 +0.6
276,125 + H281DRAFT_04543 0.21 +0.3
276,126 - H281DRAFT_04543 0.21 +0.3
276,126 - H281DRAFT_04543 0.21 +0.4
276,126 - H281DRAFT_04543 0.21 +0.0
276,166 - H281DRAFT_04543 0.26 +0.6
276,166 - H281DRAFT_04543 0.26 +0.6
276,204 + H281DRAFT_04543 0.32 -0.0
276,205 - H281DRAFT_04543 0.32 +0.3
276,205 - H281DRAFT_04543 0.32 +0.1
276,213 - H281DRAFT_04543 0.33 +0.2
276,387 + H281DRAFT_04543 0.57 -0.2
276,423 + H281DRAFT_04543 0.62 -0.9
276,423 + H281DRAFT_04543 0.62 +0.4
276,424 - H281DRAFT_04543 0.62 -0.4
276,424 - H281DRAFT_04543 0.62 +0.1
276,424 - H281DRAFT_04543 0.62 -0.2
276,424 - +0.9
276,432 + H281DRAFT_04543 0.64 +0.4
276,433 - H281DRAFT_04543 0.64 +0.3
276,748 - +0.1
276,769 + -1.4
276,792 - +0.5
276,807 + -1.5
276,810 + +0.0

Or see this region's nucleotide sequence