Experiment: p-Coumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03883 and H281DRAFT_03884 overlap by 4 nucleotides H281DRAFT_03884 and H281DRAFT_03885 overlap by 53 nucleotides H281DRAFT_03885 and H281DRAFT_03886 are separated by 33 nucleotides
H281DRAFT_03883: H281DRAFT_03883 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 413,186 to 414,778
_03883
H281DRAFT_03884: H281DRAFT_03884 - RND family efflux transporter, MFP subunit, at 414,775 to 415,791
_03884
H281DRAFT_03885: H281DRAFT_03885 - Protein of unknown function (DUF1656), at 415,739 to 415,948
_03885
H281DRAFT_03886: H281DRAFT_03886 - Uncharacterized membrane protein YccC, at 415,982 to 418,084
_03886
Position (kb) 415
416 Strain fitness (log2 ratio) -1
0
1 at 415.484 kb on + strand, within H281DRAFT_03884 at 415.543 kb on + strand, within H281DRAFT_03884 at 415.637 kb on + strand, within H281DRAFT_03884 at 415.638 kb on - strand, within H281DRAFT_03884 at 415.638 kb on - strand, within H281DRAFT_03884 at 415.641 kb on - strand, within H281DRAFT_03884 at 415.791 kb on + strand at 415.791 kb on + strand at 415.792 kb on - strand, within H281DRAFT_03885 at 415.792 kb on - strand, within H281DRAFT_03885 at 415.881 kb on + strand at 415.931 kb on - strand at 415.935 kb on - strand at 416.288 kb on - strand, within H281DRAFT_03886 at 416.551 kb on - strand, within H281DRAFT_03886 at 416.617 kb on - strand, within H281DRAFT_03886
Per-strain Table
Position Strand Gene LocusTag Fraction p-Coumaric (C) remove 415,484 + H281DRAFT_03884 0.70 +0.7 415,543 + H281DRAFT_03884 0.76 -0.0 415,637 + H281DRAFT_03884 0.85 +1.0 415,638 - H281DRAFT_03884 0.85 +0.5 415,638 - H281DRAFT_03884 0.85 +1.7 415,641 - H281DRAFT_03884 0.85 +0.2 415,791 + +0.6 415,791 + +0.7 415,792 - H281DRAFT_03885 0.25 +1.5 415,792 - H281DRAFT_03885 0.25 -0.5 415,881 + +0.7 415,931 - +0.5 415,935 - -0.1 416,288 - H281DRAFT_03886 0.15 +0.7 416,551 - H281DRAFT_03886 0.27 +0.2 416,617 - H281DRAFT_03886 0.30 +0.7
Or see this region's nucleotide sequence