Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03614

Experiment: p-Coumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03613 and H281DRAFT_03614 are separated by 223 nucleotidesH281DRAFT_03614 and H281DRAFT_03615 are separated by 142 nucleotides H281DRAFT_03613: H281DRAFT_03613 - hypothetical protein, at 122,830 to 125,445 _03613 H281DRAFT_03614: H281DRAFT_03614 - ABC-type transporter Mla maintaining outer membrane lipid asymmetry, MlaC component, at 125,669 to 126,274 _03614 H281DRAFT_03615: H281DRAFT_03615 - hopanoid biosynthesis associated radical SAM protein HpnH, at 126,417 to 127,571 _03615 Position (kb) 125 126 127Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 124.763 kb on - strand, within H281DRAFT_03613at 124.763 kb on - strand, within H281DRAFT_03613at 124.876 kb on + strandat 124.885 kb on + strand, within H281DRAFT_03613at 124.969 kb on - strand, within H281DRAFT_03613at 125.095 kb on - strand, within H281DRAFT_03613at 125.345 kb on + strandat 125.346 kb on - strandat 125.346 kb on - strandat 125.430 kb on + strandat 125.430 kb on + strandat 125.430 kb on + strandat 125.430 kb on + strandat 125.431 kb on - strandat 125.431 kb on - strandat 125.431 kb on - strandat 125.431 kb on - strandat 125.447 kb on + strandat 125.464 kb on - strandat 125.497 kb on + strandat 125.497 kb on + strandat 125.497 kb on + strandat 125.497 kb on + strandat 125.497 kb on + strandat 125.498 kb on - strandat 125.498 kb on - strandat 125.498 kb on - strandat 125.499 kb on + strandat 125.594 kb on + strandat 125.595 kb on - strandat 125.595 kb on - strandat 125.596 kb on + strandat 125.596 kb on + strandat 125.597 kb on - strandat 125.597 kb on - strandat 125.668 kb on + strandat 125.668 kb on + strandat 125.668 kb on + strandat 125.678 kb on + strandat 125.706 kb on + strandat 125.751 kb on + strand, within H281DRAFT_03614at 125.752 kb on - strand, within H281DRAFT_03614at 125.770 kb on + strand, within H281DRAFT_03614at 125.939 kb on + strand, within H281DRAFT_03614at 125.939 kb on + strand, within H281DRAFT_03614at 125.939 kb on + strand, within H281DRAFT_03614at 125.940 kb on - strand, within H281DRAFT_03614at 125.940 kb on - strand, within H281DRAFT_03614at 125.940 kb on - strand, within H281DRAFT_03614at 125.972 kb on + strand, within H281DRAFT_03614at 125.972 kb on + strand, within H281DRAFT_03614at 125.973 kb on - strand, within H281DRAFT_03614at 126.143 kb on + strand, within H281DRAFT_03614at 126.143 kb on + strand, within H281DRAFT_03614at 126.143 kb on + strand, within H281DRAFT_03614at 126.144 kb on - strand, within H281DRAFT_03614at 126.144 kb on - strand, within H281DRAFT_03614at 126.154 kb on + strand, within H281DRAFT_03614at 126.154 kb on + strand, within H281DRAFT_03614at 126.155 kb on - strand, within H281DRAFT_03614at 126.155 kb on - strand, within H281DRAFT_03614at 126.183 kb on - strand, within H281DRAFT_03614at 126.305 kb on + strandat 126.305 kb on + strandat 126.508 kb on + strandat 126.508 kb on + strandat 126.509 kb on - strandat 126.653 kb on + strand, within H281DRAFT_03615at 126.653 kb on + strand, within H281DRAFT_03615at 126.654 kb on - strand, within H281DRAFT_03615at 126.688 kb on + strand, within H281DRAFT_03615at 126.689 kb on - strandat 126.689 kb on - strand, within H281DRAFT_03615at 126.755 kb on - strand, within H281DRAFT_03615at 126.814 kb on + strand, within H281DRAFT_03615at 126.815 kb on - strand, within H281DRAFT_03615at 126.964 kb on + strand, within H281DRAFT_03615at 126.965 kb on - strand, within H281DRAFT_03615at 126.965 kb on - strand, within H281DRAFT_03615at 126.970 kb on + strand, within H281DRAFT_03615at 127.201 kb on + strand, within H281DRAFT_03615at 127.202 kb on - strand, within H281DRAFT_03615at 127.202 kb on - strand, within H281DRAFT_03615at 127.217 kb on - strand, within H281DRAFT_03615at 127.253 kb on + strand, within H281DRAFT_03615at 127.254 kb on - strand, within H281DRAFT_03615at 127.261 kb on + strand, within H281DRAFT_03615

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Per-strain Table

Position Strand Gene LocusTag Fraction p-Coumaric (C)
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124,763 - H281DRAFT_03613 0.74 -1.8
124,763 - H281DRAFT_03613 0.74 -2.7
124,876 + -0.8
124,885 + H281DRAFT_03613 0.79 -1.8
124,969 - H281DRAFT_03613 0.82 -1.3
125,095 - H281DRAFT_03613 0.87 -2.3
125,345 + -3.7
125,346 - +0.1
125,346 - -2.4
125,430 + -1.8
125,430 + -1.4
125,430 + +0.5
125,430 + -1.7
125,431 - -0.9
125,431 - -1.1
125,431 - -1.3
125,431 - -1.9
125,447 + -0.8
125,464 - +0.2
125,497 + -1.2
125,497 + +0.0
125,497 + -0.6
125,497 + -0.9
125,497 + +0.0
125,498 - +1.2
125,498 - -0.4
125,498 - +0.1
125,499 + -0.2
125,594 + -0.3
125,595 - -0.6
125,595 - +1.0
125,596 + +0.2
125,596 + -1.0
125,597 - -0.1
125,597 - +0.8
125,668 + -0.5
125,668 + +0.0
125,668 + +0.3
125,678 + -2.0
125,706 + -1.7
125,751 + H281DRAFT_03614 0.14 -2.0
125,752 - H281DRAFT_03614 0.14 -0.3
125,770 + H281DRAFT_03614 0.17 -0.8
125,939 + H281DRAFT_03614 0.45 -1.4
125,939 + H281DRAFT_03614 0.45 -1.5
125,939 + H281DRAFT_03614 0.45 -2.2
125,940 - H281DRAFT_03614 0.45 -0.3
125,940 - H281DRAFT_03614 0.45 -1.1
125,940 - H281DRAFT_03614 0.45 -2.3
125,972 + H281DRAFT_03614 0.50 -1.4
125,972 + H281DRAFT_03614 0.50 -2.3
125,973 - H281DRAFT_03614 0.50 -2.8
126,143 + H281DRAFT_03614 0.78 -1.9
126,143 + H281DRAFT_03614 0.78 -2.1
126,143 + H281DRAFT_03614 0.78 -1.3
126,144 - H281DRAFT_03614 0.78 -2.2
126,144 - H281DRAFT_03614 0.78 -1.5
126,154 + H281DRAFT_03614 0.80 -2.4
126,154 + H281DRAFT_03614 0.80 -1.6
126,155 - H281DRAFT_03614 0.80 -1.4
126,155 - H281DRAFT_03614 0.80 -1.3
126,183 - H281DRAFT_03614 0.85 -1.5
126,305 + +1.1
126,305 + -0.0
126,508 + +2.1
126,508 + -0.7
126,509 - -0.2
126,653 + H281DRAFT_03615 0.20 -2.1
126,653 + H281DRAFT_03615 0.20 +0.6
126,654 - H281DRAFT_03615 0.21 -0.6
126,688 + H281DRAFT_03615 0.23 -0.9
126,689 - -0.1
126,689 - H281DRAFT_03615 0.24 -1.2
126,755 - H281DRAFT_03615 0.29 -1.3
126,814 + H281DRAFT_03615 0.34 -1.9
126,815 - H281DRAFT_03615 0.34 -0.1
126,964 + H281DRAFT_03615 0.47 -2.8
126,965 - H281DRAFT_03615 0.47 -3.0
126,965 - H281DRAFT_03615 0.47 -2.9
126,970 + H281DRAFT_03615 0.48 +0.2
127,201 + H281DRAFT_03615 0.68 -1.8
127,202 - H281DRAFT_03615 0.68 -1.2
127,202 - H281DRAFT_03615 0.68 -2.9
127,217 - H281DRAFT_03615 0.69 -2.9
127,253 + H281DRAFT_03615 0.72 -1.7
127,254 - H281DRAFT_03615 0.72 -1.9
127,261 + H281DRAFT_03615 0.73 -1.6

Or see this region's nucleotide sequence