Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03461

Experiment: p-Coumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03460 and H281DRAFT_03461 are separated by 20 nucleotidesH281DRAFT_03461 and H281DRAFT_03462 are separated by 360 nucleotides H281DRAFT_03460: H281DRAFT_03460 - Protein of unknown function (DUF2950), at 543,905 to 544,849 _03460 H281DRAFT_03461: H281DRAFT_03461 - Predicted membrane protein, at 544,870 to 546,159 _03461 H281DRAFT_03462: H281DRAFT_03462 - membrane protein DedA, SNARE-associated domain, at 546,520 to 548,523 _03462 Position (kb) 544 545 546 547Strain fitness (log2 ratio) -1 0 1at 544.170 kb on + strand, within H281DRAFT_03460at 545.552 kb on + strand, within H281DRAFT_03461at 545.552 kb on + strand, within H281DRAFT_03461at 545.604 kb on + strand, within H281DRAFT_03461at 545.607 kb on - strand, within H281DRAFT_03461at 546.295 kb on + strandat 546.295 kb on + strandat 546.481 kb on + strandat 547.020 kb on - strand, within H281DRAFT_03462

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Per-strain Table

Position Strand Gene LocusTag Fraction p-Coumaric (C)
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544,170 + H281DRAFT_03460 0.28 +0.8
545,552 + H281DRAFT_03461 0.53 -0.1
545,552 + H281DRAFT_03461 0.53 +0.8
545,604 + H281DRAFT_03461 0.57 +1.4
545,607 - H281DRAFT_03461 0.57 +0.0
546,295 + +0.0
546,295 + +0.2
546,481 + +0.2
547,020 - H281DRAFT_03462 0.25 +0.6

Or see this region's nucleotide sequence