Experiment: p-Coumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03365 and H281DRAFT_03366 overlap by 4 nucleotides H281DRAFT_03366 and H281DRAFT_03367 are separated by 22 nucleotides H281DRAFT_03367 and H281DRAFT_03368 are separated by 852 nucleotides
H281DRAFT_03365: H281DRAFT_03365 - choline dehydrogenase, at 425,817 to 427,457
_03365
H281DRAFT_03366: H281DRAFT_03366 - electron transfer flavoprotein beta subunit, at 427,454 to 428,203
_03366
H281DRAFT_03367: H281DRAFT_03367 - electron transfer flavoprotein alpha subunit apoprotein, at 428,226 to 429,170
_03367
H281DRAFT_03368: H281DRAFT_03368 - Uncharacterised protein family protein, at 430,023 to 430,307
_03368
Position (kb) 428
429
430 Strain fitness (log2 ratio) -1
0
1
2 at 427.438 kb on - strand at 428.251 kb on + strand at 428.294 kb on + strand at 428.617 kb on - strand, within H281DRAFT_03367 at 428.997 kb on + strand, within H281DRAFT_03367 at 429.168 kb on + strand at 429.169 kb on - strand at 429.173 kb on - strand at 429.242 kb on + strand at 429.269 kb on + strand at 429.526 kb on + strand at 429.703 kb on - strand at 429.761 kb on + strand at 429.762 kb on - strand at 429.762 kb on - strand at 429.959 kb on + strand at 430.135 kb on - strand, within H281DRAFT_03368 at 430.157 kb on + strand, within H281DRAFT_03368
Per-strain Table
Position Strand Gene LocusTag Fraction p-Coumaric (C) remove 427,438 - -0.0 428,251 + -0.8 428,294 + +0.1 428,617 - H281DRAFT_03367 0.41 +2.0 428,997 + H281DRAFT_03367 0.82 +0.2 429,168 + -0.5 429,169 - -0.6 429,173 - -0.5 429,242 + +0.3 429,269 + -0.2 429,526 + +0.7 429,703 - -1.0 429,761 + -0.5 429,762 - +0.2 429,762 - -0.2 429,959 + +0.5 430,135 - H281DRAFT_03368 0.39 +0.2 430,157 + H281DRAFT_03368 0.47 +0.3
Or see this region's nucleotide sequence