Experiment: p-Coumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03025 and H281DRAFT_03026 are separated by 546 nucleotides H281DRAFT_03026 and H281DRAFT_03027 overlap by 4 nucleotides
H281DRAFT_03025: H281DRAFT_03025 - methyl-accepting chemotaxis sensory transducer with Cache sensor, at 52,779 to 54,320
_03025
H281DRAFT_03026: H281DRAFT_03026 - phosphoenolpyruvate mutase, at 54,867 to 56,591
_03026
H281DRAFT_03027: H281DRAFT_03027 - phosphonopyruvate decarboxylase, at 56,588 to 57,769
_03027
Position (kb) 54
55
56
57 Strain fitness (log2 ratio) -2
-1
0
1 at 53.902 kb on + strand, within H281DRAFT_03025 at 54.061 kb on + strand, within H281DRAFT_03025 at 54.061 kb on + strand, within H281DRAFT_03025 at 54.062 kb on - strand, within H281DRAFT_03025 at 54.062 kb on - strand, within H281DRAFT_03025 at 54.155 kb on - strand, within H281DRAFT_03025 at 54.157 kb on + strand, within H281DRAFT_03025 at 54.321 kb on - strand at 54.432 kb on + strand at 54.452 kb on + strand at 54.452 kb on + strand at 54.532 kb on + strand at 54.556 kb on + strand at 54.557 kb on - strand at 54.568 kb on - strand at 54.797 kb on + strand at 54.798 kb on - strand at 54.798 kb on - strand at 54.842 kb on - strand at 55.084 kb on + strand, within H281DRAFT_03026 at 55.220 kb on + strand, within H281DRAFT_03026 at 55.221 kb on - strand, within H281DRAFT_03026 at 55.221 kb on - strand, within H281DRAFT_03026 at 55.250 kb on + strand, within H281DRAFT_03026 at 55.250 kb on + strand, within H281DRAFT_03026 at 55.250 kb on + strand, within H281DRAFT_03026 at 55.539 kb on + strand, within H281DRAFT_03026 at 55.543 kb on - strand, within H281DRAFT_03026 at 55.655 kb on + strand, within H281DRAFT_03026 at 55.656 kb on - strand, within H281DRAFT_03026 at 55.756 kb on - strand, within H281DRAFT_03026 at 55.756 kb on - strand, within H281DRAFT_03026 at 56.068 kb on - strand, within H281DRAFT_03026 at 56.091 kb on + strand, within H281DRAFT_03026 at 56.091 kb on + strand, within H281DRAFT_03026 at 56.092 kb on - strand, within H281DRAFT_03026 at 56.092 kb on - strand, within H281DRAFT_03026 at 56.092 kb on - strand, within H281DRAFT_03026 at 56.454 kb on + strand at 56.454 kb on + strand at 56.455 kb on - strand at 56.684 kb on + strand at 56.684 kb on + strand at 56.684 kb on + strand at 56.711 kb on + strand, within H281DRAFT_03027 at 56.711 kb on + strand at 56.712 kb on - strand, within H281DRAFT_03027 at 56.712 kb on - strand, within H281DRAFT_03027 at 57.330 kb on - strand, within H281DRAFT_03027
Per-strain Table
Position Strand Gene LocusTag Fraction p-Coumaric (C) remove 53,902 + H281DRAFT_03025 0.73 -0.4 54,061 + H281DRAFT_03025 0.83 +0.1 54,061 + H281DRAFT_03025 0.83 -0.5 54,062 - H281DRAFT_03025 0.83 +0.4 54,062 - H281DRAFT_03025 0.83 +0.2 54,155 - H281DRAFT_03025 0.89 +0.9 54,157 + H281DRAFT_03025 0.89 +0.5 54,321 - -0.1 54,432 + +0.6 54,452 + +0.0 54,452 + +0.0 54,532 + +0.8 54,556 + -0.9 54,557 - -0.4 54,568 - -0.1 54,797 + -0.3 54,798 - -1.0 54,798 - -1.2 54,842 - -1.3 55,084 + H281DRAFT_03026 0.13 -0.9 55,220 + H281DRAFT_03026 0.20 -2.1 55,221 - H281DRAFT_03026 0.21 -1.0 55,221 - H281DRAFT_03026 0.21 -0.9 55,250 + H281DRAFT_03026 0.22 -1.1 55,250 + H281DRAFT_03026 0.22 -0.2 55,250 + H281DRAFT_03026 0.22 -1.3 55,539 + H281DRAFT_03026 0.39 -0.7 55,543 - H281DRAFT_03026 0.39 +1.1 55,655 + H281DRAFT_03026 0.46 -2.7 55,656 - H281DRAFT_03026 0.46 -1.6 55,756 - H281DRAFT_03026 0.52 -1.1 55,756 - H281DRAFT_03026 0.52 -1.5 56,068 - H281DRAFT_03026 0.70 -0.8 56,091 + H281DRAFT_03026 0.71 -1.4 56,091 + H281DRAFT_03026 0.71 -1.1 56,092 - H281DRAFT_03026 0.71 -1.6 56,092 - H281DRAFT_03026 0.71 -1.5 56,092 - H281DRAFT_03026 0.71 -1.1 56,454 + -1.0 56,454 + -1.0 56,455 - +0.8 56,684 + -1.0 56,684 + -2.0 56,684 + -0.7 56,711 + H281DRAFT_03027 0.10 -1.2 56,711 + +0.5 56,712 - H281DRAFT_03027 0.10 -0.9 56,712 - H281DRAFT_03027 0.10 -1.4 57,330 - H281DRAFT_03027 0.63 -0.3
Or see this region's nucleotide sequence