Experiment: p-Coumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02609 and H281DRAFT_02610 are separated by 202 nucleotides H281DRAFT_02610 and H281DRAFT_02611 are separated by 211 nucleotides
H281DRAFT_02609: H281DRAFT_02609 - two-component system, OmpR family, sensor kinase, at 185,252 to 186,583
_02609
H281DRAFT_02610: H281DRAFT_02610 - methyl-accepting chemotaxis sensory transducer with Cache sensor, at 186,786 to 188,342
_02610
H281DRAFT_02611: H281DRAFT_02611 - transcriptional regulator, RpiR family, at 188,554 to 189,519
_02611
Position (kb) 186
187
188
189 Strain fitness (log2 ratio) -1
0
1 at 186.336 kb on + strand, within H281DRAFT_02609 at 186.336 kb on + strand, within H281DRAFT_02609 at 186.336 kb on + strand, within H281DRAFT_02609 at 186.337 kb on - strand, within H281DRAFT_02609 at 186.818 kb on - strand at 186.924 kb on - strand at 187.045 kb on - strand, within H281DRAFT_02610 at 187.055 kb on + strand, within H281DRAFT_02610 at 187.527 kb on + strand, within H281DRAFT_02610 at 188.133 kb on - strand, within H281DRAFT_02610 at 188.498 kb on + strand at 188.584 kb on + strand at 188.585 kb on - strand at 188.830 kb on - strand, within H281DRAFT_02611 at 189.185 kb on + strand, within H281DRAFT_02611 at 189.282 kb on + strand, within H281DRAFT_02611 at 189.283 kb on - strand, within H281DRAFT_02611
Per-strain Table
Position Strand Gene LocusTag Fraction p-Coumaric (C) remove 186,336 + H281DRAFT_02609 0.81 -0.4 186,336 + H281DRAFT_02609 0.81 +0.0 186,336 + H281DRAFT_02609 0.81 -0.4 186,337 - H281DRAFT_02609 0.81 -0.6 186,818 - -0.6 186,924 - +0.3 187,045 - H281DRAFT_02610 0.17 +0.8 187,055 + H281DRAFT_02610 0.17 +1.0 187,527 + H281DRAFT_02610 0.48 +0.3 188,133 - H281DRAFT_02610 0.87 +0.8 188,498 + -0.1 188,584 + -0.2 188,585 - -1.1 188,830 - H281DRAFT_02611 0.29 -0.8 189,185 + H281DRAFT_02611 0.65 -0.3 189,282 + H281DRAFT_02611 0.75 +0.1 189,283 - H281DRAFT_02611 0.75 +0.2
Or see this region's nucleotide sequence