Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02543

Experiment: p-Coumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02542 and H281DRAFT_02543 are separated by 158 nucleotidesH281DRAFT_02543 and H281DRAFT_02544 are separated by 105 nucleotidesH281DRAFT_02544 and H281DRAFT_02545 are separated by 233 nucleotides H281DRAFT_02542: H281DRAFT_02542 - 2-Methylisocitrate lyase, PEP mutase family, at 117,410 to 118,282 _02542 H281DRAFT_02543: H281DRAFT_02543 - GntR family transcriptional regulator, at 118,441 to 119,238 _02543 H281DRAFT_02544: H281DRAFT_02544 - Nicotinamidase-related amidase, at 119,344 to 119,907 _02544 H281DRAFT_02545: H281DRAFT_02545 - tRNA A37 threonylcarbamoyladenosine synthetase subunit TsaC/SUA5/YrdC, at 120,141 to 120,875 _02545 Position (kb) 118 119 120Strain fitness (log2 ratio) -2 -1 0 1 2at 117.494 kb on - strandat 117.640 kb on + strand, within H281DRAFT_02542at 117.641 kb on - strand, within H281DRAFT_02542at 118.205 kb on + strandat 118.205 kb on + strandat 118.312 kb on + strandat 118.312 kb on + strandat 118.422 kb on + strandat 118.438 kb on - strandat 118.480 kb on - strandat 118.480 kb on - strandat 118.495 kb on + strandat 118.495 kb on + strandat 118.704 kb on + strand, within H281DRAFT_02543at 118.893 kb on + strand, within H281DRAFT_02543at 119.123 kb on + strand, within H281DRAFT_02543at 119.285 kb on + strandat 119.286 kb on - strandat 119.319 kb on + strandat 119.320 kb on - strandat 119.332 kb on - strandat 119.338 kb on + strandat 119.338 kb on + strandat 119.339 kb on - strandat 119.479 kb on + strand, within H281DRAFT_02544at 119.480 kb on - strand, within H281DRAFT_02544at 119.480 kb on - strand, within H281DRAFT_02544at 119.701 kb on - strand, within H281DRAFT_02544at 119.711 kb on + strand, within H281DRAFT_02544at 119.712 kb on - strand, within H281DRAFT_02544at 119.712 kb on - strand, within H281DRAFT_02544at 119.712 kb on - strand, within H281DRAFT_02544at 119.712 kb on - strand, within H281DRAFT_02544at 119.752 kb on + strand, within H281DRAFT_02544at 119.873 kb on - strandat 119.873 kb on - strandat 119.873 kb on - strandat 120.094 kb on - strandat 120.094 kb on - strandat 120.125 kb on + strandat 120.125 kb on + strandat 120.125 kb on + strandat 120.125 kb on + strandat 120.126 kb on - strandat 120.169 kb on + strandat 120.169 kb on + strandat 120.169 kb on + strandat 120.169 kb on + strandat 120.169 kb on + strandat 120.170 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction p-Coumaric (C)
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117,494 - -0.2
117,640 + H281DRAFT_02542 0.26 +0.1
117,641 - H281DRAFT_02542 0.26 -0.3
118,205 + +0.4
118,205 + +0.6
118,312 + +0.4
118,312 + -0.0
118,422 + -0.1
118,438 - -1.1
118,480 - -0.3
118,480 - +0.2
118,495 + +1.3
118,495 + -2.3
118,704 + H281DRAFT_02543 0.33 -0.4
118,893 + H281DRAFT_02543 0.57 -1.2
119,123 + H281DRAFT_02543 0.85 -1.1
119,285 + -0.2
119,286 - +1.1
119,319 + -1.0
119,320 - -0.2
119,332 - -0.7
119,338 + +0.4
119,338 + +1.6
119,339 - +2.3
119,479 + H281DRAFT_02544 0.24 +0.2
119,480 - H281DRAFT_02544 0.24 +0.2
119,480 - H281DRAFT_02544 0.24 -1.5
119,701 - H281DRAFT_02544 0.63 +0.5
119,711 + H281DRAFT_02544 0.65 +0.4
119,712 - H281DRAFT_02544 0.65 -0.1
119,712 - H281DRAFT_02544 0.65 -0.5
119,712 - H281DRAFT_02544 0.65 +0.1
119,712 - H281DRAFT_02544 0.65 +0.3
119,752 + H281DRAFT_02544 0.72 +0.1
119,873 - -0.0
119,873 - +0.5
119,873 - -0.5
120,094 - -0.1
120,094 - +0.5
120,125 + +0.8
120,125 + +0.4
120,125 + +0.0
120,125 + +0.4
120,126 - +0.6
120,169 + +0.1
120,169 + +0.3
120,169 + -0.5
120,169 + +0.2
120,169 + -0.3
120,170 - -0.4

Or see this region's nucleotide sequence