Experiment: p-Coumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02423 and H281DRAFT_02424 overlap by 22 nucleotides H281DRAFT_02424 and H281DRAFT_02425 overlap by 20 nucleotides
H281DRAFT_02423: H281DRAFT_02423 - Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II, at 594,976 to 596,379
_02423
H281DRAFT_02424: H281DRAFT_02424 - Phenylacetate-coenzyme A ligase PaaK, adenylate-forming domain family, at 596,358 to 597,440
_02424
H281DRAFT_02425: H281DRAFT_02425 - NAD-dependent aldehyde dehydrogenases, at 597,421 to 598,638
_02425
Position (kb) 596
597
598 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 595.459 kb on + strand, within H281DRAFT_02423 at 595.459 kb on + strand, within H281DRAFT_02423 at 595.459 kb on + strand, within H281DRAFT_02423 at 595.460 kb on - strand, within H281DRAFT_02423 at 595.511 kb on - strand, within H281DRAFT_02423 at 595.511 kb on - strand, within H281DRAFT_02423 at 595.511 kb on - strand, within H281DRAFT_02423 at 595.516 kb on + strand, within H281DRAFT_02423 at 595.651 kb on - strand, within H281DRAFT_02423 at 595.651 kb on - strand, within H281DRAFT_02423 at 595.655 kb on - strand, within H281DRAFT_02423 at 595.655 kb on - strand, within H281DRAFT_02423 at 595.655 kb on - strand, within H281DRAFT_02423 at 595.655 kb on - strand, within H281DRAFT_02423 at 595.802 kb on - strand, within H281DRAFT_02423 at 595.802 kb on - strand, within H281DRAFT_02423 at 595.834 kb on + strand, within H281DRAFT_02423 at 596.197 kb on - strand, within H281DRAFT_02423 at 596.222 kb on + strand, within H281DRAFT_02423 at 596.223 kb on - strand, within H281DRAFT_02423 at 596.353 kb on + strand at 596.354 kb on - strand at 596.473 kb on - strand, within H281DRAFT_02424 at 596.473 kb on - strand, within H281DRAFT_02424 at 596.473 kb on - strand, within H281DRAFT_02424 at 596.851 kb on - strand, within H281DRAFT_02424 at 596.942 kb on + strand, within H281DRAFT_02424 at 596.942 kb on + strand, within H281DRAFT_02424 at 596.943 kb on - strand, within H281DRAFT_02424 at 597.124 kb on - strand, within H281DRAFT_02424 at 597.124 kb on - strand, within H281DRAFT_02424 at 597.126 kb on + strand, within H281DRAFT_02424 at 597.127 kb on - strand, within H281DRAFT_02424 at 597.127 kb on - strand, within H281DRAFT_02424 at 597.127 kb on - strand, within H281DRAFT_02424 at 597.372 kb on + strand at 597.372 kb on + strand at 597.373 kb on - strand at 597.425 kb on + strand at 597.425 kb on + strand at 597.425 kb on + strand at 597.426 kb on - strand at 597.426 kb on - strand at 597.426 kb on - strand at 597.430 kb on - strand at 597.430 kb on - strand at 597.430 kb on - strand at 597.430 kb on - strand at 597.430 kb on - strand at 597.869 kb on + strand, within H281DRAFT_02425 at 597.869 kb on + strand, within H281DRAFT_02425 at 597.870 kb on - strand, within H281DRAFT_02425 at 597.969 kb on + strand, within H281DRAFT_02425 at 597.969 kb on + strand, within H281DRAFT_02425 at 597.970 kb on - strand, within H281DRAFT_02425 at 597.970 kb on - strand, within H281DRAFT_02425 at 598.114 kb on + strand, within H281DRAFT_02425 at 598.114 kb on + strand, within H281DRAFT_02425 at 598.115 kb on - strand, within H281DRAFT_02425 at 598.115 kb on - strand, within H281DRAFT_02425 at 598.164 kb on - strand, within H281DRAFT_02425 at 598.240 kb on - strand, within H281DRAFT_02425 at 598.270 kb on + strand, within H281DRAFT_02425 at 598.342 kb on + strand, within H281DRAFT_02425
Per-strain Table
Position Strand Gene LocusTag Fraction p-Coumaric (C) remove 595,459 + H281DRAFT_02423 0.34 -0.9 595,459 + H281DRAFT_02423 0.34 -0.5 595,459 + H281DRAFT_02423 0.34 +1.4 595,460 - H281DRAFT_02423 0.34 -0.8 595,511 - H281DRAFT_02423 0.38 +0.2 595,511 - H281DRAFT_02423 0.38 -0.6 595,511 - H281DRAFT_02423 0.38 +0.2 595,516 + H281DRAFT_02423 0.38 -0.5 595,651 - H281DRAFT_02423 0.48 -0.6 595,651 - H281DRAFT_02423 0.48 -0.2 595,655 - H281DRAFT_02423 0.48 -0.3 595,655 - H281DRAFT_02423 0.48 -1.8 595,655 - H281DRAFT_02423 0.48 -0.2 595,655 - H281DRAFT_02423 0.48 -0.8 595,802 - H281DRAFT_02423 0.59 -0.0 595,802 - H281DRAFT_02423 0.59 -1.5 595,834 + H281DRAFT_02423 0.61 -0.6 596,197 - H281DRAFT_02423 0.87 -0.2 596,222 + H281DRAFT_02423 0.89 -2.9 596,223 - H281DRAFT_02423 0.89 -0.5 596,353 + -0.6 596,354 - -0.4 596,473 - H281DRAFT_02424 0.11 -0.5 596,473 - H281DRAFT_02424 0.11 -1.1 596,473 - H281DRAFT_02424 0.11 -1.2 596,851 - H281DRAFT_02424 0.46 -0.3 596,942 + H281DRAFT_02424 0.54 -0.5 596,942 + H281DRAFT_02424 0.54 -1.1 596,943 - H281DRAFT_02424 0.54 +0.1 597,124 - H281DRAFT_02424 0.71 -0.8 597,124 - H281DRAFT_02424 0.71 -1.2 597,126 + H281DRAFT_02424 0.71 -0.1 597,127 - H281DRAFT_02424 0.71 -0.2 597,127 - H281DRAFT_02424 0.71 +0.2 597,127 - H281DRAFT_02424 0.71 -1.4 597,372 + -0.6 597,372 + -0.4 597,373 - -0.7 597,425 + -0.8 597,425 + +0.0 597,425 + +0.9 597,426 - -1.1 597,426 - -0.7 597,426 - -1.3 597,430 - -0.9 597,430 - -1.4 597,430 - -0.7 597,430 - -0.4 597,430 - -1.7 597,869 + H281DRAFT_02425 0.37 -0.2 597,869 + H281DRAFT_02425 0.37 -1.0 597,870 - H281DRAFT_02425 0.37 -0.7 597,969 + H281DRAFT_02425 0.45 -1.6 597,969 + H281DRAFT_02425 0.45 -1.0 597,970 - H281DRAFT_02425 0.45 -0.8 597,970 - H281DRAFT_02425 0.45 -1.2 598,114 + H281DRAFT_02425 0.57 -0.9 598,114 + H281DRAFT_02425 0.57 -2.1 598,115 - H281DRAFT_02425 0.57 -1.1 598,115 - H281DRAFT_02425 0.57 -1.6 598,164 - H281DRAFT_02425 0.61 -1.5 598,240 - H281DRAFT_02425 0.67 -0.5 598,270 + H281DRAFT_02425 0.70 -0.1 598,342 + H281DRAFT_02425 0.76 -0.7
Or see this region's nucleotide sequence