Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02357

Experiment: p-Coumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02356 and H281DRAFT_02357 are separated by 556 nucleotidesH281DRAFT_02357 and H281DRAFT_02358 are separated by 241 nucleotides H281DRAFT_02356: H281DRAFT_02356 - general secretion pathway protein D, at 513,527 to 515,878 _02356 H281DRAFT_02357: H281DRAFT_02357 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 516,435 to 516,842 _02357 H281DRAFT_02358: H281DRAFT_02358 - GTPase, G3E family, at 517,084 to 518,400 _02358 Position (kb) 516 517Strain fitness (log2 ratio) -2 -1 0 1 2at 515.501 kb on + strand, within H281DRAFT_02356at 515.502 kb on - strand, within H281DRAFT_02356at 515.502 kb on - strand, within H281DRAFT_02356at 515.502 kb on - strand, within H281DRAFT_02356at 515.502 kb on - strand, within H281DRAFT_02356at 515.550 kb on + strand, within H281DRAFT_02356at 515.550 kb on + strand, within H281DRAFT_02356at 515.597 kb on + strand, within H281DRAFT_02356at 515.597 kb on + strand, within H281DRAFT_02356at 515.598 kb on - strand, within H281DRAFT_02356at 515.598 kb on - strand, within H281DRAFT_02356at 515.600 kb on + strandat 515.615 kb on + strand, within H281DRAFT_02356at 515.616 kb on - strand, within H281DRAFT_02356at 515.616 kb on - strand, within H281DRAFT_02356at 515.756 kb on + strandat 515.756 kb on + strandat 515.900 kb on + strandat 515.900 kb on + strandat 515.900 kb on + strandat 515.901 kb on - strandat 515.901 kb on - strandat 515.901 kb on - strandat 515.993 kb on - strandat 516.049 kb on - strandat 516.049 kb on - strandat 516.186 kb on + strandat 516.186 kb on + strandat 516.186 kb on + strandat 516.186 kb on + strandat 516.186 kb on + strandat 516.187 kb on - strandat 516.187 kb on - strandat 516.187 kb on - strandat 516.187 kb on - strandat 516.187 kb on - strandat 516.195 kb on + strandat 516.195 kb on + strandat 516.196 kb on - strandat 516.199 kb on + strandat 516.199 kb on + strandat 516.199 kb on + strandat 516.200 kb on - strandat 516.230 kb on + strandat 516.230 kb on + strandat 516.230 kb on + strandat 516.231 kb on - strandat 516.231 kb on - strandat 516.231 kb on - strandat 516.353 kb on + strandat 516.353 kb on + strandat 516.364 kb on - strandat 516.364 kb on - strandat 516.431 kb on + strandat 516.431 kb on + strandat 516.489 kb on + strand, within H281DRAFT_02357at 516.489 kb on + strand, within H281DRAFT_02357at 516.489 kb on + strand, within H281DRAFT_02357at 516.490 kb on - strand, within H281DRAFT_02357at 516.588 kb on + strand, within H281DRAFT_02357at 516.637 kb on - strand, within H281DRAFT_02357at 516.681 kb on + strand, within H281DRAFT_02357at 516.681 kb on + strand, within H281DRAFT_02357at 516.681 kb on + strand, within H281DRAFT_02357at 516.682 kb on - strand, within H281DRAFT_02357at 516.682 kb on - strand, within H281DRAFT_02357at 516.682 kb on - strand, within H281DRAFT_02357at 516.682 kb on - strand, within H281DRAFT_02357at 516.682 kb on - strand, within H281DRAFT_02357at 516.682 kb on - strand, within H281DRAFT_02357at 516.682 kb on - strand, within H281DRAFT_02357at 516.720 kb on + strand, within H281DRAFT_02357at 516.721 kb on - strand, within H281DRAFT_02357at 516.721 kb on - strand, within H281DRAFT_02357at 516.721 kb on - strand, within H281DRAFT_02357at 516.728 kb on + strand, within H281DRAFT_02357at 516.728 kb on + strand, within H281DRAFT_02357at 516.729 kb on - strand, within H281DRAFT_02357at 516.729 kb on - strand, within H281DRAFT_02357at 516.729 kb on - strand, within H281DRAFT_02357at 516.729 kb on - strand, within H281DRAFT_02357at 516.729 kb on - strand, within H281DRAFT_02357at 516.750 kb on + strand, within H281DRAFT_02357at 516.783 kb on + strand, within H281DRAFT_02357at 516.783 kb on + strand, within H281DRAFT_02357at 516.783 kb on + strand, within H281DRAFT_02357at 516.783 kb on + strand, within H281DRAFT_02357at 516.784 kb on - strand, within H281DRAFT_02357at 516.880 kb on + strandat 516.880 kb on + strandat 516.881 kb on - strandat 516.881 kb on - strandat 517.078 kb on - strandat 517.221 kb on + strand, within H281DRAFT_02358at 517.238 kb on + strand, within H281DRAFT_02358at 517.476 kb on + strand, within H281DRAFT_02358at 517.477 kb on - strand, within H281DRAFT_02358

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Per-strain Table

Position Strand Gene LocusTag Fraction p-Coumaric (C)
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515,501 + H281DRAFT_02356 0.84 +0.2
515,502 - H281DRAFT_02356 0.84 -0.8
515,502 - H281DRAFT_02356 0.84 -0.5
515,502 - H281DRAFT_02356 0.84 +0.2
515,502 - H281DRAFT_02356 0.84 -0.8
515,550 + H281DRAFT_02356 0.86 -1.1
515,550 + H281DRAFT_02356 0.86 -0.0
515,597 + H281DRAFT_02356 0.88 -0.1
515,597 + H281DRAFT_02356 0.88 -1.2
515,598 - H281DRAFT_02356 0.88 -0.8
515,598 - H281DRAFT_02356 0.88 -1.8
515,600 + +0.5
515,615 + H281DRAFT_02356 0.89 -1.7
515,616 - H281DRAFT_02356 0.89 -0.9
515,616 - H281DRAFT_02356 0.89 -0.5
515,756 + -0.5
515,756 + +1.8
515,900 + -1.6
515,900 + +0.8
515,900 + +0.5
515,901 - -0.6
515,901 - -0.8
515,901 - -0.1
515,993 - +0.4
516,049 - -0.0
516,049 - +0.5
516,186 + -1.8
516,186 + -0.1
516,186 + +0.5
516,186 + +0.3
516,186 + +0.5
516,187 - -0.1
516,187 - +0.2
516,187 - +0.3
516,187 - +0.7
516,187 - +0.7
516,195 + +1.0
516,195 + +1.2
516,196 - -0.2
516,199 + +0.3
516,199 + -0.5
516,199 + +0.0
516,200 - +0.2
516,230 + +0.2
516,230 + -0.6
516,230 + -0.7
516,231 - -0.3
516,231 - +0.4
516,231 - -0.1
516,353 + -0.3
516,353 + -0.6
516,364 - -0.5
516,364 - -0.1
516,431 + +0.0
516,431 + -0.7
516,489 + H281DRAFT_02357 0.13 -0.7
516,489 + H281DRAFT_02357 0.13 -0.8
516,489 + H281DRAFT_02357 0.13 -0.6
516,490 - H281DRAFT_02357 0.13 -1.4
516,588 + H281DRAFT_02357 0.38 -0.1
516,637 - H281DRAFT_02357 0.50 -0.4
516,681 + H281DRAFT_02357 0.60 -0.0
516,681 + H281DRAFT_02357 0.60 +0.8
516,681 + H281DRAFT_02357 0.60 -0.7
516,682 - H281DRAFT_02357 0.61 +0.0
516,682 - H281DRAFT_02357 0.61 -0.5
516,682 - H281DRAFT_02357 0.61 -0.3
516,682 - H281DRAFT_02357 0.61 -0.3
516,682 - H281DRAFT_02357 0.61 -0.1
516,682 - H281DRAFT_02357 0.61 -0.4
516,682 - H281DRAFT_02357 0.61 +0.4
516,720 + H281DRAFT_02357 0.70 +0.3
516,721 - H281DRAFT_02357 0.70 -2.7
516,721 - H281DRAFT_02357 0.70 -0.1
516,721 - H281DRAFT_02357 0.70 +0.1
516,728 + H281DRAFT_02357 0.72 -0.7
516,728 + H281DRAFT_02357 0.72 +0.0
516,729 - H281DRAFT_02357 0.72 -0.1
516,729 - H281DRAFT_02357 0.72 +0.8
516,729 - H281DRAFT_02357 0.72 +0.1
516,729 - H281DRAFT_02357 0.72 -0.2
516,729 - H281DRAFT_02357 0.72 +0.0
516,750 + H281DRAFT_02357 0.77 +0.1
516,783 + H281DRAFT_02357 0.85 +0.4
516,783 + H281DRAFT_02357 0.85 +0.2
516,783 + H281DRAFT_02357 0.85 -1.1
516,783 + H281DRAFT_02357 0.85 -1.3
516,784 - H281DRAFT_02357 0.86 -0.7
516,880 + -0.8
516,880 + +0.7
516,881 - +0.5
516,881 - -0.0
517,078 - -0.1
517,221 + H281DRAFT_02358 0.10 -0.6
517,238 + H281DRAFT_02358 0.12 -1.1
517,476 + H281DRAFT_02358 0.30 -0.5
517,477 - H281DRAFT_02358 0.30 -0.9

Or see this region's nucleotide sequence