Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02258

Experiment: p-Coumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02257 and H281DRAFT_02258 overlap by 1 nucleotidesH281DRAFT_02258 and H281DRAFT_02259 are separated by 76 nucleotides H281DRAFT_02257: H281DRAFT_02257 - HNH endonuclease, at 402,703 to 404,058 _02257 H281DRAFT_02258: H281DRAFT_02258 - DNA adenine methylase, at 404,058 to 404,966 _02258 H281DRAFT_02259: H281DRAFT_02259 - adenine-specific DNA-methyltransferase, at 405,043 to 406,380 _02259 Position (kb) 404 405Strain fitness (log2 ratio) -1 0 1 2 3at 403.114 kb on - strand, within H281DRAFT_02257at 403.114 kb on - strand, within H281DRAFT_02257at 403.114 kb on - strand, within H281DRAFT_02257at 403.114 kb on - strand, within H281DRAFT_02257at 403.114 kb on - strand, within H281DRAFT_02257at 403.115 kb on + strand, within H281DRAFT_02257at 403.115 kb on + strand, within H281DRAFT_02257at 403.115 kb on + strand, within H281DRAFT_02257at 403.116 kb on - strand, within H281DRAFT_02257at 403.116 kb on - strand, within H281DRAFT_02257at 403.116 kb on - strand, within H281DRAFT_02257at 403.116 kb on - strand, within H281DRAFT_02257at 403.116 kb on - strand, within H281DRAFT_02257at 403.116 kb on - strand, within H281DRAFT_02257at 403.144 kb on + strand, within H281DRAFT_02257at 403.144 kb on + strand, within H281DRAFT_02257at 403.145 kb on - strand, within H281DRAFT_02257at 403.212 kb on - strand, within H281DRAFT_02257at 403.283 kb on - strand, within H281DRAFT_02257at 403.283 kb on - strand, within H281DRAFT_02257at 403.283 kb on - strand, within H281DRAFT_02257at 403.283 kb on - strand, within H281DRAFT_02257at 403.325 kb on + strand, within H281DRAFT_02257at 403.339 kb on + strand, within H281DRAFT_02257at 403.340 kb on - strand, within H281DRAFT_02257at 403.340 kb on - strand, within H281DRAFT_02257at 403.343 kb on + strand, within H281DRAFT_02257at 403.344 kb on - strand, within H281DRAFT_02257at 403.344 kb on - strand, within H281DRAFT_02257at 403.344 kb on - strand, within H281DRAFT_02257at 403.344 kb on - strand, within H281DRAFT_02257at 403.375 kb on + strand, within H281DRAFT_02257at 403.376 kb on - strand, within H281DRAFT_02257at 403.434 kb on + strand, within H281DRAFT_02257at 403.435 kb on - strand, within H281DRAFT_02257at 403.435 kb on - strand, within H281DRAFT_02257at 403.443 kb on + strand, within H281DRAFT_02257at 403.444 kb on - strand, within H281DRAFT_02257at 403.483 kb on + strand, within H281DRAFT_02257at 403.484 kb on - strand, within H281DRAFT_02257at 403.484 kb on - strand, within H281DRAFT_02257at 403.484 kb on - strand, within H281DRAFT_02257at 403.559 kb on + strand, within H281DRAFT_02257at 403.560 kb on - strand, within H281DRAFT_02257at 403.579 kb on + strand, within H281DRAFT_02257at 403.579 kb on + strand, within H281DRAFT_02257at 403.579 kb on + strand, within H281DRAFT_02257at 403.579 kb on + strand, within H281DRAFT_02257at 403.579 kb on + strand, within H281DRAFT_02257at 403.580 kb on - strand, within H281DRAFT_02257at 403.580 kb on - strand, within H281DRAFT_02257at 403.583 kb on + strand, within H281DRAFT_02257at 403.584 kb on - strand, within H281DRAFT_02257at 403.584 kb on - strand, within H281DRAFT_02257at 403.584 kb on - strand, within H281DRAFT_02257at 403.626 kb on + strand, within H281DRAFT_02257at 403.637 kb on + strand, within H281DRAFT_02257at 403.638 kb on - strand, within H281DRAFT_02257at 403.797 kb on + strand, within H281DRAFT_02257at 403.798 kb on - strand, within H281DRAFT_02257at 403.821 kb on + strand, within H281DRAFT_02257at 403.822 kb on - strand, within H281DRAFT_02257at 403.860 kb on + strand, within H281DRAFT_02257at 403.860 kb on + strand, within H281DRAFT_02257at 403.861 kb on - strand, within H281DRAFT_02257at 403.861 kb on - strand, within H281DRAFT_02257at 403.861 kb on - strand, within H281DRAFT_02257at 403.862 kb on + strand, within H281DRAFT_02257at 403.862 kb on + strand, within H281DRAFT_02257at 403.862 kb on + strand, within H281DRAFT_02257at 403.863 kb on - strand, within H281DRAFT_02257at 403.863 kb on - strand, within H281DRAFT_02257at 403.863 kb on - strand, within H281DRAFT_02257at 403.863 kb on - strand, within H281DRAFT_02257at 403.863 kb on - strand, within H281DRAFT_02257at 403.866 kb on + strand, within H281DRAFT_02257at 403.866 kb on + strand, within H281DRAFT_02257at 403.866 kb on + strand, within H281DRAFT_02257at 403.866 kb on + strand, within H281DRAFT_02257at 403.867 kb on - strand, within H281DRAFT_02257at 403.867 kb on - strand, within H281DRAFT_02257at 403.867 kb on - strand, within H281DRAFT_02257at 403.953 kb on + strandat 403.953 kb on + strandat 403.954 kb on - strandat 403.955 kb on + strandat 403.955 kb on + strandat 403.956 kb on - strandat 403.968 kb on - strandat 403.968 kb on - strandat 403.975 kb on - strandat 403.975 kb on - strandat 403.978 kb on - strandat 403.978 kb on - strandat 403.978 kb on - strandat 403.991 kb on + strandat 403.991 kb on + strandat 403.992 kb on - strandat 404.018 kb on + strandat 404.021 kb on + strandat 404.021 kb on + strandat 404.059 kb on + strandat 404.060 kb on - strandat 404.072 kb on + strandat 404.075 kb on + strandat 404.207 kb on + strand, within H281DRAFT_02258at 404.207 kb on + strand, within H281DRAFT_02258at 404.271 kb on + strand, within H281DRAFT_02258at 404.349 kb on + strand, within H281DRAFT_02258at 404.349 kb on + strand, within H281DRAFT_02258at 404.349 kb on + strandat 404.349 kb on + strand, within H281DRAFT_02258at 404.353 kb on + strand, within H281DRAFT_02258at 404.423 kb on + strand, within H281DRAFT_02258at 404.423 kb on + strand, within H281DRAFT_02258at 404.556 kb on + strand, within H281DRAFT_02258at 404.569 kb on + strand, within H281DRAFT_02258at 404.569 kb on + strand, within H281DRAFT_02258at 404.592 kb on + strand, within H281DRAFT_02258at 404.597 kb on + strand, within H281DRAFT_02258at 404.632 kb on + strand, within H281DRAFT_02258at 404.659 kb on + strand, within H281DRAFT_02258at 404.659 kb on + strand, within H281DRAFT_02258at 404.659 kb on + strand, within H281DRAFT_02258at 404.760 kb on + strand, within H281DRAFT_02258at 404.760 kb on + strand, within H281DRAFT_02258at 404.778 kb on + strand, within H281DRAFT_02258at 404.778 kb on + strand, within H281DRAFT_02258at 404.835 kb on + strand, within H281DRAFT_02258at 404.835 kb on + strand, within H281DRAFT_02258at 404.835 kb on + strand, within H281DRAFT_02258at 404.835 kb on + strand, within H281DRAFT_02258at 404.835 kb on + strand, within H281DRAFT_02258at 404.839 kb on + strand, within H281DRAFT_02258at 404.839 kb on + strand, within H281DRAFT_02258at 404.839 kb on + strand, within H281DRAFT_02258at 404.839 kb on + strand, within H281DRAFT_02258at 404.885 kb on + strandat 404.885 kb on + strandat 404.922 kb on + strandat 404.922 kb on + strandat 404.926 kb on + strandat 404.926 kb on + strandat 404.926 kb on + strandat 404.926 kb on + strandat 404.926 kb on + strandat 404.926 kb on + strandat 404.926 kb on + strandat 404.926 kb on + strandat 404.926 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction p-Coumaric (C)
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403,114 - H281DRAFT_02257 0.30 -0.4
403,114 - H281DRAFT_02257 0.30 +0.1
403,114 - H281DRAFT_02257 0.30 -0.2
403,114 - H281DRAFT_02257 0.30 -0.5
403,114 - H281DRAFT_02257 0.30 +0.0
403,115 + H281DRAFT_02257 0.30 -0.7
403,115 + H281DRAFT_02257 0.30 -0.5
403,115 + H281DRAFT_02257 0.30 -0.6
403,116 - H281DRAFT_02257 0.30 -0.4
403,116 - H281DRAFT_02257 0.30 +0.4
403,116 - H281DRAFT_02257 0.30 -0.3
403,116 - H281DRAFT_02257 0.30 -0.4
403,116 - H281DRAFT_02257 0.30 -0.3
403,116 - H281DRAFT_02257 0.30 -0.3
403,144 + H281DRAFT_02257 0.33 -0.4
403,144 + H281DRAFT_02257 0.33 +0.5
403,145 - H281DRAFT_02257 0.33 -0.0
403,212 - H281DRAFT_02257 0.38 -0.0
403,283 - H281DRAFT_02257 0.43 +0.7
403,283 - H281DRAFT_02257 0.43 -0.7
403,283 - H281DRAFT_02257 0.43 +0.5
403,283 - H281DRAFT_02257 0.43 +0.2
403,325 + H281DRAFT_02257 0.46 +0.7
403,339 + H281DRAFT_02257 0.47 +0.4
403,340 - H281DRAFT_02257 0.47 +0.1
403,340 - H281DRAFT_02257 0.47 -0.0
403,343 + H281DRAFT_02257 0.47 +0.8
403,344 - H281DRAFT_02257 0.47 -0.1
403,344 - H281DRAFT_02257 0.47 +0.1
403,344 - H281DRAFT_02257 0.47 -0.2
403,344 - H281DRAFT_02257 0.47 +0.2
403,375 + H281DRAFT_02257 0.50 -0.4
403,376 - H281DRAFT_02257 0.50 -0.2
403,434 + H281DRAFT_02257 0.54 +0.8
403,435 - H281DRAFT_02257 0.54 +0.5
403,435 - H281DRAFT_02257 0.54 +0.3
403,443 + H281DRAFT_02257 0.55 -0.2
403,444 - H281DRAFT_02257 0.55 -1.0
403,483 + H281DRAFT_02257 0.58 +0.7
403,484 - H281DRAFT_02257 0.58 +0.5
403,484 - H281DRAFT_02257 0.58 +0.3
403,484 - H281DRAFT_02257 0.58 -1.5
403,559 + H281DRAFT_02257 0.63 +0.4
403,560 - H281DRAFT_02257 0.63 +0.5
403,579 + H281DRAFT_02257 0.65 -0.3
403,579 + H281DRAFT_02257 0.65 +0.6
403,579 + H281DRAFT_02257 0.65 +0.2
403,579 + H281DRAFT_02257 0.65 -0.8
403,579 + H281DRAFT_02257 0.65 -0.1
403,580 - H281DRAFT_02257 0.65 +0.3
403,580 - H281DRAFT_02257 0.65 -0.5
403,583 + H281DRAFT_02257 0.65 +0.2
403,584 - H281DRAFT_02257 0.65 +0.4
403,584 - H281DRAFT_02257 0.65 +0.2
403,584 - H281DRAFT_02257 0.65 +0.2
403,626 + H281DRAFT_02257 0.68 -0.1
403,637 + H281DRAFT_02257 0.69 +0.5
403,638 - H281DRAFT_02257 0.69 +0.3
403,797 + H281DRAFT_02257 0.81 +0.3
403,798 - H281DRAFT_02257 0.81 +0.0
403,821 + H281DRAFT_02257 0.82 -0.2
403,822 - H281DRAFT_02257 0.83 -0.1
403,860 + H281DRAFT_02257 0.85 +0.6
403,860 + H281DRAFT_02257 0.85 -0.5
403,861 - H281DRAFT_02257 0.85 -0.2
403,861 - H281DRAFT_02257 0.85 -0.3
403,861 - H281DRAFT_02257 0.85 +0.6
403,862 + H281DRAFT_02257 0.85 +0.2
403,862 + H281DRAFT_02257 0.85 -0.1
403,862 + H281DRAFT_02257 0.85 +1.7
403,863 - H281DRAFT_02257 0.86 +0.2
403,863 - H281DRAFT_02257 0.86 +0.3
403,863 - H281DRAFT_02257 0.86 +0.2
403,863 - H281DRAFT_02257 0.86 +0.6
403,863 - H281DRAFT_02257 0.86 -0.6
403,866 + H281DRAFT_02257 0.86 +0.2
403,866 + H281DRAFT_02257 0.86 -0.1
403,866 + H281DRAFT_02257 0.86 +0.4
403,866 + H281DRAFT_02257 0.86 +0.5
403,867 - H281DRAFT_02257 0.86 +0.1
403,867 - H281DRAFT_02257 0.86 -0.3
403,867 - H281DRAFT_02257 0.86 -0.3
403,953 + +0.5
403,953 + +0.1
403,954 - +0.2
403,955 + +0.1
403,955 + +0.4
403,956 - -0.1
403,968 - +0.6
403,968 - +0.0
403,975 - +0.2
403,975 - -0.1
403,978 - +0.0
403,978 - +0.0
403,978 - +0.0
403,991 + +1.3
403,991 + +0.1
403,992 - +0.0
404,018 + +0.2
404,021 + +0.9
404,021 + +0.7
404,059 + -0.3
404,060 - -0.5
404,072 + -0.2
404,075 + +1.6
404,207 + H281DRAFT_02258 0.16 +0.1
404,207 + H281DRAFT_02258 0.16 +0.3
404,271 + H281DRAFT_02258 0.23 -0.3
404,349 + H281DRAFT_02258 0.32 -0.4
404,349 + H281DRAFT_02258 0.32 +0.0
404,349 + +3.0
404,349 + H281DRAFT_02258 0.32 -0.4
404,353 + H281DRAFT_02258 0.32 -0.3
404,423 + H281DRAFT_02258 0.40 -0.6
404,423 + H281DRAFT_02258 0.40 +0.3
404,556 + H281DRAFT_02258 0.55 -0.1
404,569 + H281DRAFT_02258 0.56 -0.4
404,569 + H281DRAFT_02258 0.56 -0.4
404,592 + H281DRAFT_02258 0.59 -0.4
404,597 + H281DRAFT_02258 0.59 +0.2
404,632 + H281DRAFT_02258 0.63 -0.2
404,659 + H281DRAFT_02258 0.66 -0.9
404,659 + H281DRAFT_02258 0.66 +0.1
404,659 + H281DRAFT_02258 0.66 -1.0
404,760 + H281DRAFT_02258 0.77 -0.7
404,760 + H281DRAFT_02258 0.77 -1.6
404,778 + H281DRAFT_02258 0.79 -0.8
404,778 + H281DRAFT_02258 0.79 -0.4
404,835 + H281DRAFT_02258 0.85 -1.6
404,835 + H281DRAFT_02258 0.85 -0.2
404,835 + H281DRAFT_02258 0.85 -1.3
404,835 + H281DRAFT_02258 0.85 -0.7
404,835 + H281DRAFT_02258 0.85 -1.6
404,839 + H281DRAFT_02258 0.86 -1.0
404,839 + H281DRAFT_02258 0.86 +0.6
404,839 + H281DRAFT_02258 0.86 -0.0
404,839 + H281DRAFT_02258 0.86 -0.7
404,885 + +0.4
404,885 + -0.6
404,922 + +1.4
404,922 + +0.4
404,926 + -1.2
404,926 + -0.2
404,926 + -0.5
404,926 + -0.0
404,926 + -1.5
404,926 + -0.5
404,926 + -1.0
404,926 + +0.4
404,926 + +0.3

Or see this region's nucleotide sequence