Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02205

Experiment: p-Coumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02204 and H281DRAFT_02205 are separated by 594 nucleotidesH281DRAFT_02205 and H281DRAFT_02206 are separated by 319 nucleotidesH281DRAFT_02206 and H281DRAFT_02207 are separated by 9 nucleotides H281DRAFT_02204: H281DRAFT_02204 - GTPase, G3E family, at 345,520 to 346,617 _02204 H281DRAFT_02205: H281DRAFT_02205 - transcriptional regulator, TraR/DksA family, at 347,212 to 347,631 _02205 H281DRAFT_02206: H281DRAFT_02206 - HslV component of HslUV peptidase. Threonine peptidase. MEROPS family T01B, at 347,951 to 348,487 _02206 H281DRAFT_02207: H281DRAFT_02207 - ATP-dependent HslUV protease ATP-binding subunit HslU, at 348,497 to 349,843 _02207 Position (kb) 347 348Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 346.429 kb on + strand, within H281DRAFT_02204at 346.430 kb on - strand, within H281DRAFT_02204at 346.444 kb on + strand, within H281DRAFT_02204at 346.445 kb on - strand, within H281DRAFT_02204at 346.445 kb on - strand, within H281DRAFT_02204at 346.445 kb on - strand, within H281DRAFT_02204at 346.445 kb on - strand, within H281DRAFT_02204at 346.587 kb on + strandat 346.587 kb on + strandat 346.588 kb on - strandat 346.588 kb on - strandat 346.588 kb on - strandat 346.642 kb on + strandat 346.642 kb on + strandat 346.736 kb on - strandat 346.738 kb on + strandat 346.738 kb on + strandat 346.739 kb on - strandat 346.779 kb on - strandat 346.780 kb on + strandat 346.847 kb on + strandat 346.848 kb on - strandat 346.848 kb on - strandat 346.852 kb on + strandat 346.852 kb on + strandat 346.852 kb on + strandat 346.853 kb on - strandat 346.853 kb on - strandat 346.853 kb on - strandat 347.005 kb on + strandat 347.006 kb on - strandat 347.006 kb on - strandat 347.062 kb on - strandat 347.174 kb on + strandat 347.174 kb on + strandat 347.174 kb on + strandat 347.269 kb on + strand, within H281DRAFT_02205at 347.270 kb on - strand, within H281DRAFT_02205at 347.798 kb on + strandat 347.799 kb on - strandat 347.799 kb on - strandat 347.838 kb on + strandat 347.838 kb on + strandat 347.838 kb on + strandat 347.839 kb on - strandat 347.839 kb on - strandat 347.863 kb on - strandat 347.951 kb on - strandat 347.951 kb on - strandat 348.080 kb on + strand, within H281DRAFT_02206at 348.080 kb on + strand, within H281DRAFT_02206at 348.080 kb on + strand, within H281DRAFT_02206at 348.080 kb on + strand, within H281DRAFT_02206at 348.082 kb on + strand, within H281DRAFT_02206at 348.181 kb on + strand, within H281DRAFT_02206at 348.350 kb on + strand, within H281DRAFT_02206at 348.350 kb on + strand, within H281DRAFT_02206at 348.350 kb on + strand, within H281DRAFT_02206at 348.350 kb on + strand, within H281DRAFT_02206at 348.351 kb on - strand, within H281DRAFT_02206at 348.485 kb on + strandat 348.486 kb on - strandat 348.544 kb on + strandat 348.544 kb on + strandat 348.544 kb on + strandat 348.544 kb on + strandat 348.544 kb on + strandat 348.544 kb on + strandat 348.545 kb on - strandat 348.545 kb on - strandat 348.545 kb on - strandat 348.615 kb on + strandat 348.615 kb on + strandat 348.615 kb on + strandat 348.615 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction p-Coumaric (C)
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346,429 + H281DRAFT_02204 0.83 +0.2
346,430 - H281DRAFT_02204 0.83 +0.3
346,444 + H281DRAFT_02204 0.84 -0.3
346,445 - H281DRAFT_02204 0.84 +1.0
346,445 - H281DRAFT_02204 0.84 -0.5
346,445 - H281DRAFT_02204 0.84 +0.1
346,445 - H281DRAFT_02204 0.84 +0.7
346,587 + -0.5
346,587 + -0.4
346,588 - +0.6
346,588 - +0.6
346,588 - -0.1
346,642 + +0.6
346,642 + -0.8
346,736 - +0.4
346,738 + -0.1
346,738 + -0.2
346,739 - -1.3
346,779 - +0.8
346,780 + +0.3
346,847 + +0.0
346,848 - -0.0
346,848 - +0.6
346,852 + -0.4
346,852 + +0.5
346,852 + +0.8
346,853 - -1.9
346,853 - -2.1
346,853 - -2.0
347,005 + -0.3
347,006 - -1.1
347,006 - -3.2
347,062 - -4.5
347,174 + -0.1
347,174 + +0.4
347,174 + -0.7
347,269 + H281DRAFT_02205 0.14 -1.1
347,270 - H281DRAFT_02205 0.14 -2.0
347,798 + +0.1
347,799 - -0.1
347,799 - -0.2
347,838 + -1.8
347,838 + +0.8
347,838 + -0.2
347,839 - +0.1
347,839 - +0.2
347,863 - -0.2
347,951 - -0.1
347,951 - -0.6
348,080 + H281DRAFT_02206 0.24 +0.4
348,080 + H281DRAFT_02206 0.24 +0.6
348,080 + H281DRAFT_02206 0.24 -0.4
348,080 + H281DRAFT_02206 0.24 -0.0
348,082 + H281DRAFT_02206 0.24 -0.2
348,181 + H281DRAFT_02206 0.43 -1.6
348,350 + H281DRAFT_02206 0.74 -0.2
348,350 + H281DRAFT_02206 0.74 -0.3
348,350 + H281DRAFT_02206 0.74 -0.1
348,350 + H281DRAFT_02206 0.74 -0.3
348,351 - H281DRAFT_02206 0.74 -0.1
348,485 + -0.1
348,486 - -0.3
348,544 + +0.3
348,544 + +0.1
348,544 + -0.5
348,544 + +0.2
348,544 + +0.2
348,544 + +0.0
348,545 - +0.2
348,545 - +0.6
348,545 - -1.1
348,615 + -0.2
348,615 + -1.2
348,615 + +0.3
348,615 + -0.1

Or see this region's nucleotide sequence