Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02201

Experiment: p-Coumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02200 and H281DRAFT_02201 are separated by 58 nucleotidesH281DRAFT_02201 and H281DRAFT_02202 are separated by 42 nucleotides H281DRAFT_02200: H281DRAFT_02200 - diaminopimelate epimerase, at 341,384 to 342,247 _02200 H281DRAFT_02201: H281DRAFT_02201 - hypothetical protein, at 342,306 to 343,079 _02201 H281DRAFT_02202: H281DRAFT_02202 - integrase/recombinase XerC, at 343,122 to 344,045 _02202 Position (kb) 342 343 344Strain fitness (log2 ratio) -1 0 1at 341.372 kb on + strandat 341.372 kb on + strandat 341.372 kb on + strandat 341.372 kb on + strandat 341.373 kb on - strandat 341.373 kb on - strandat 341.373 kb on - strandat 341.377 kb on + strandat 341.377 kb on + strandat 342.323 kb on + strandat 342.329 kb on + strandat 342.329 kb on + strandat 342.329 kb on + strandat 342.366 kb on + strandat 342.534 kb on + strand, within H281DRAFT_02201at 342.609 kb on + strand, within H281DRAFT_02201at 342.699 kb on + strand, within H281DRAFT_02201at 342.971 kb on - strand, within H281DRAFT_02201at 343.191 kb on - strandat 343.191 kb on - strandat 343.191 kb on - strandat 343.539 kb on + strand, within H281DRAFT_02202at 343.972 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction p-Coumaric (C)
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341,372 + -0.3
341,372 + +0.2
341,372 + +0.0
341,372 + +0.0
341,373 - -0.2
341,373 - +0.3
341,373 - +0.6
341,377 + +0.2
341,377 + +0.8
342,323 + +1.4
342,329 + +0.1
342,329 + +0.1
342,329 + +0.4
342,366 + -0.8
342,534 + H281DRAFT_02201 0.29 -0.4
342,609 + H281DRAFT_02201 0.39 -1.3
342,699 + H281DRAFT_02201 0.51 -1.2
342,971 - H281DRAFT_02201 0.86 -0.3
343,191 - -1.3
343,191 - -0.7
343,191 - +0.1
343,539 + H281DRAFT_02202 0.45 +0.1
343,972 - -0.3

Or see this region's nucleotide sequence