Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02187

Experiment: p-Coumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02185 and H281DRAFT_02186 overlap by 10 nucleotidesH281DRAFT_02186 and H281DRAFT_02187 overlap by 28 nucleotidesH281DRAFT_02187 and H281DRAFT_02188 are separated by 53 nucleotidesH281DRAFT_02188 and H281DRAFT_02189 are separated by 3 nucleotides H281DRAFT_02185: H281DRAFT_02185 - hypothetical protein, at 328,116 to 329,405 _02185 H281DRAFT_02186: H281DRAFT_02186 - hypothetical protein, at 329,396 to 330,004 _02186 H281DRAFT_02187: H281DRAFT_02187 - predicted sulfurylase large subunit, molybdopterin cytosine dinucleotide biosynthesis /predicted sulfurylase small subunit, molybdopterin cytosine dinucleotide biosynthesis, at 329,977 to 330,999 _02187 H281DRAFT_02188: H281DRAFT_02188 - hypothetical protein, at 331,053 to 331,793 _02188 H281DRAFT_02189: H281DRAFT_02189 - hypothetical protein, at 331,797 to 331,991 _02189 Position (kb) 329 330 331Strain fitness (log2 ratio) -2 -1 0 1at 329.200 kb on + strand, within H281DRAFT_02185at 329.200 kb on + strand, within H281DRAFT_02185at 329.208 kb on - strand, within H281DRAFT_02185at 329.297 kb on + strandat 329.297 kb on + strandat 329.297 kb on + strandat 329.298 kb on - strandat 329.302 kb on + strandat 329.303 kb on - strandat 329.303 kb on - strandat 329.416 kb on + strandat 329.416 kb on + strandat 329.417 kb on - strandat 329.417 kb on - strandat 329.417 kb on - strandat 329.417 kb on - strandat 329.440 kb on + strandat 329.440 kb on + strandat 329.441 kb on - strandat 329.525 kb on + strand, within H281DRAFT_02186at 329.616 kb on - strand, within H281DRAFT_02186at 329.616 kb on - strand, within H281DRAFT_02186at 329.717 kb on + strand, within H281DRAFT_02186at 329.717 kb on + strand, within H281DRAFT_02186at 329.718 kb on - strand, within H281DRAFT_02186at 329.718 kb on - strand, within H281DRAFT_02186at 329.718 kb on - strand, within H281DRAFT_02186at 329.718 kb on - strand, within H281DRAFT_02186at 330.221 kb on - strand, within H281DRAFT_02187at 330.503 kb on - strand, within H281DRAFT_02187at 330.513 kb on + strand, within H281DRAFT_02187at 330.514 kb on - strand, within H281DRAFT_02187at 330.514 kb on - strandat 330.532 kb on + strand, within H281DRAFT_02187at 330.565 kb on + strand, within H281DRAFT_02187at 330.603 kb on - strand, within H281DRAFT_02187at 330.730 kb on + strand, within H281DRAFT_02187at 330.730 kb on + strand, within H281DRAFT_02187at 330.730 kb on + strand, within H281DRAFT_02187at 330.730 kb on + strand, within H281DRAFT_02187at 330.731 kb on - strand, within H281DRAFT_02187at 330.731 kb on - strand, within H281DRAFT_02187at 330.731 kb on - strand, within H281DRAFT_02187at 330.759 kb on + strand, within H281DRAFT_02187at 330.759 kb on + strand, within H281DRAFT_02187at 330.759 kb on + strand, within H281DRAFT_02187at 330.841 kb on + strand, within H281DRAFT_02187at 330.842 kb on - strand, within H281DRAFT_02187at 330.842 kb on - strand, within H281DRAFT_02187at 330.990 kb on + strandat 330.998 kb on - strandat 330.998 kb on - strandat 331.054 kb on + strandat 331.054 kb on + strandat 331.055 kb on - strandat 331.055 kb on - strandat 331.055 kb on - strandat 331.646 kb on + strand, within H281DRAFT_02188at 331.646 kb on + strand, within H281DRAFT_02188at 331.647 kb on - strand, within H281DRAFT_02188at 331.647 kb on - strand, within H281DRAFT_02188at 331.769 kb on + strandat 331.770 kb on - strandat 331.817 kb on + strand, within H281DRAFT_02189

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Per-strain Table

Position Strand Gene LocusTag Fraction p-Coumaric (C)
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329,200 + H281DRAFT_02185 0.84 -0.1
329,200 + H281DRAFT_02185 0.84 -0.3
329,208 - H281DRAFT_02185 0.85 +0.6
329,297 + +0.1
329,297 + -0.9
329,297 + +0.7
329,298 - -0.4
329,302 + -0.1
329,303 - +0.1
329,303 - -0.1
329,416 + +0.5
329,416 + -1.6
329,417 - +0.3
329,417 - +0.1
329,417 - -0.1
329,417 - -0.5
329,440 + -0.7
329,440 + -0.8
329,441 - -0.1
329,525 + H281DRAFT_02186 0.21 -0.1
329,616 - H281DRAFT_02186 0.36 +0.1
329,616 - H281DRAFT_02186 0.36 +0.1
329,717 + H281DRAFT_02186 0.53 -0.3
329,717 + H281DRAFT_02186 0.53 +0.0
329,718 - H281DRAFT_02186 0.53 +0.6
329,718 - H281DRAFT_02186 0.53 +0.3
329,718 - H281DRAFT_02186 0.53 -0.3
329,718 - H281DRAFT_02186 0.53 +0.1
330,221 - H281DRAFT_02187 0.24 -1.2
330,503 - H281DRAFT_02187 0.51 -1.1
330,513 + H281DRAFT_02187 0.52 -0.7
330,514 - H281DRAFT_02187 0.52 -1.2
330,514 - +1.6
330,532 + H281DRAFT_02187 0.54 -1.3
330,565 + H281DRAFT_02187 0.57 -1.0
330,603 - H281DRAFT_02187 0.61 -1.5
330,730 + H281DRAFT_02187 0.74 -0.6
330,730 + H281DRAFT_02187 0.74 -2.6
330,730 + H281DRAFT_02187 0.74 -0.6
330,730 + H281DRAFT_02187 0.74 -1.8
330,731 - H281DRAFT_02187 0.74 -0.7
330,731 - H281DRAFT_02187 0.74 -2.7
330,731 - H281DRAFT_02187 0.74 -0.6
330,759 + H281DRAFT_02187 0.76 -0.5
330,759 + H281DRAFT_02187 0.76 -1.0
330,759 + H281DRAFT_02187 0.76 -1.6
330,841 + H281DRAFT_02187 0.84 -1.4
330,842 - H281DRAFT_02187 0.85 -1.1
330,842 - H281DRAFT_02187 0.85 -1.0
330,990 + +0.0
330,998 - +0.3
330,998 - +0.3
331,054 + +0.4
331,054 + -0.1
331,055 - -0.4
331,055 - +0.5
331,055 - +0.0
331,646 + H281DRAFT_02188 0.80 +0.5
331,646 + H281DRAFT_02188 0.80 -0.0
331,647 - H281DRAFT_02188 0.80 +0.2
331,647 - H281DRAFT_02188 0.80 +0.0
331,769 + +0.1
331,770 - +0.0
331,817 + H281DRAFT_02189 0.10 -0.6

Or see this region's nucleotide sequence