Experiment: p-Coumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01595 and H281DRAFT_01596 are separated by 106 nucleotides H281DRAFT_01596 and H281DRAFT_01597 are separated by 13 nucleotides H281DRAFT_01597 and H281DRAFT_01598 are separated by 436 nucleotides
H281DRAFT_01595: H281DRAFT_01595 - 3-carboxy-cis,cis-muconate cycloisomerase, at 473,456 to 474,835
_01595
H281DRAFT_01596: H281DRAFT_01596 - 3-oxoadipate CoA-transferase beta subunit, at 474,942 to 475,601
_01596
H281DRAFT_01597: H281DRAFT_01597 - 3-oxoadipate CoA-transferase alpha subunit, at 475,615 to 476,322
_01597
H281DRAFT_01598: H281DRAFT_01598 - transcriptional regulator, LysR family, at 476,759 to 477,688
_01598
Position (kb) 475
476
477 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 474.734 kb on + strand at 474.735 kb on - strand at 475.121 kb on + strand, within H281DRAFT_01596 at 475.122 kb on - strand, within H281DRAFT_01596 at 475.122 kb on - strand, within H281DRAFT_01596 at 475.177 kb on + strand, within H281DRAFT_01596 at 475.538 kb on - strand at 475.809 kb on + strand, within H281DRAFT_01597 at 475.844 kb on + strand, within H281DRAFT_01597 at 475.892 kb on + strand, within H281DRAFT_01597 at 475.892 kb on + strand, within H281DRAFT_01597 at 475.893 kb on - strand, within H281DRAFT_01597 at 476.070 kb on - strand, within H281DRAFT_01597 at 476.570 kb on + strand at 476.701 kb on + strand at 476.722 kb on + strand at 476.722 kb on + strand at 476.935 kb on + strand, within H281DRAFT_01598 at 476.935 kb on + strand, within H281DRAFT_01598 at 476.937 kb on - strand, within H281DRAFT_01598 at 477.049 kb on + strand, within H281DRAFT_01598 at 477.050 kb on - strand, within H281DRAFT_01598 at 477.050 kb on - strand, within H281DRAFT_01598
Per-strain Table
Position Strand Gene LocusTag Fraction p-Coumaric (C) remove 474,734 + -2.3 474,735 - -2.3 475,121 + H281DRAFT_01596 0.27 -1.5 475,122 - H281DRAFT_01596 0.27 -3.7 475,122 - H281DRAFT_01596 0.27 -4.0 475,177 + H281DRAFT_01596 0.36 -2.9 475,538 - -1.7 475,809 + H281DRAFT_01597 0.27 -0.8 475,844 + H281DRAFT_01597 0.32 -2.8 475,892 + H281DRAFT_01597 0.39 -2.8 475,892 + H281DRAFT_01597 0.39 -1.6 475,893 - H281DRAFT_01597 0.39 -2.8 476,070 - H281DRAFT_01597 0.64 -3.3 476,570 + -4.1 476,701 + +0.4 476,722 + +0.8 476,722 + -0.2 476,935 + H281DRAFT_01598 0.19 -1.2 476,935 + H281DRAFT_01598 0.19 -2.6 476,937 - H281DRAFT_01598 0.19 -2.1 477,049 + H281DRAFT_01598 0.31 -2.9 477,050 - H281DRAFT_01598 0.31 -3.3 477,050 - H281DRAFT_01598 0.31 -2.7
Or see this region's nucleotide sequence