Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01596

Experiment: p-Coumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01595 and H281DRAFT_01596 are separated by 106 nucleotidesH281DRAFT_01596 and H281DRAFT_01597 are separated by 13 nucleotides H281DRAFT_01595: H281DRAFT_01595 - 3-carboxy-cis,cis-muconate cycloisomerase, at 473,456 to 474,835 _01595 H281DRAFT_01596: H281DRAFT_01596 - 3-oxoadipate CoA-transferase beta subunit, at 474,942 to 475,601 _01596 H281DRAFT_01597: H281DRAFT_01597 - 3-oxoadipate CoA-transferase alpha subunit, at 475,615 to 476,322 _01597 Position (kb) 474 475 476Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 474.474 kb on - strand, within H281DRAFT_01595at 474.531 kb on + strand, within H281DRAFT_01595at 474.734 kb on + strandat 474.735 kb on - strandat 475.121 kb on + strand, within H281DRAFT_01596at 475.122 kb on - strand, within H281DRAFT_01596at 475.122 kb on - strand, within H281DRAFT_01596at 475.177 kb on + strand, within H281DRAFT_01596at 475.538 kb on - strandat 475.809 kb on + strand, within H281DRAFT_01597at 475.844 kb on + strand, within H281DRAFT_01597at 475.892 kb on + strand, within H281DRAFT_01597at 475.892 kb on + strand, within H281DRAFT_01597at 475.893 kb on - strand, within H281DRAFT_01597at 476.070 kb on - strand, within H281DRAFT_01597at 476.570 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction p-Coumaric (C)
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474,474 - H281DRAFT_01595 0.74 -2.5
474,531 + H281DRAFT_01595 0.78 -2.6
474,734 + -2.3
474,735 - -2.3
475,121 + H281DRAFT_01596 0.27 -1.5
475,122 - H281DRAFT_01596 0.27 -3.7
475,122 - H281DRAFT_01596 0.27 -4.0
475,177 + H281DRAFT_01596 0.36 -2.9
475,538 - -1.7
475,809 + H281DRAFT_01597 0.27 -0.8
475,844 + H281DRAFT_01597 0.32 -2.8
475,892 + H281DRAFT_01597 0.39 -2.8
475,892 + H281DRAFT_01597 0.39 -1.6
475,893 - H281DRAFT_01597 0.39 -2.8
476,070 - H281DRAFT_01597 0.64 -3.3
476,570 + -4.1

Or see this region's nucleotide sequence