Experiment: p-Coumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01592 and H281DRAFT_01593 are separated by 59 nucleotides H281DRAFT_01593 and H281DRAFT_01594 overlap by 4 nucleotides H281DRAFT_01594 and H281DRAFT_01595 are separated by 5 nucleotides
H281DRAFT_01592: H281DRAFT_01592 - transcriptional regulator, TetR family, at 471,461 to 472,210
_01592
H281DRAFT_01593: H281DRAFT_01593 - 4-carboxymuconolactone decarboxylase, at 472,270 to 472,662
_01593
H281DRAFT_01594: H281DRAFT_01594 - 3-oxoadipate enol-lactonase, at 472,659 to 473,450
_01594
H281DRAFT_01595: H281DRAFT_01595 - 3-carboxy-cis,cis-muconate cycloisomerase, at 473,456 to 474,835
_01595
Position (kb) 472
473
474 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 471.675 kb on + strand, within H281DRAFT_01592 at 471.783 kb on - strand, within H281DRAFT_01592 at 472.096 kb on - strand, within H281DRAFT_01592 at 472.240 kb on - strand at 472.727 kb on + strand at 472.904 kb on - strand, within H281DRAFT_01594 at 472.929 kb on + strand, within H281DRAFT_01594 at 473.444 kb on - strand at 473.517 kb on + strand at 473.517 kb on + strand at 473.517 kb on + strand at 473.518 kb on - strand at 473.538 kb on + strand at 473.912 kb on + strand, within H281DRAFT_01595
Per-strain Table
Position Strand Gene LocusTag Fraction p-Coumaric (C) remove 471,675 + H281DRAFT_01592 0.29 +0.2 471,783 - H281DRAFT_01592 0.43 +0.2 472,096 - H281DRAFT_01592 0.85 -0.1 472,240 - +0.3 472,727 + -2.3 472,904 - H281DRAFT_01594 0.31 -3.9 472,929 + H281DRAFT_01594 0.34 -3.5 473,444 - -2.8 473,517 + -4.0 473,517 + -4.0 473,517 + -2.7 473,518 - -0.8 473,538 + -3.0 473,912 + H281DRAFT_01595 0.33 -1.6
Or see this region's nucleotide sequence