Experiment: p-Coumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01276 and H281DRAFT_01277 are separated by 77 nucleotides H281DRAFT_01277 and H281DRAFT_01278 are separated by 120 nucleotides
H281DRAFT_01276: H281DRAFT_01276 - vanillin synthase /trans-feruloyl-CoA hydratase, at 112,400 to 113,236
_01276
H281DRAFT_01277: H281DRAFT_01277 - vanillin dehydrogenase, at 113,314 to 114,765
_01277
H281DRAFT_01278: H281DRAFT_01278 - trans-feruloyl-CoA synthase, at 114,886 to 116,775
_01278
Position (kb)
113
114
115 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 112.410 kb on - strand at 112.623 kb on - strand, within H281DRAFT_01276 at 112.907 kb on + strand, within H281DRAFT_01276 at 112.908 kb on - strand, within H281DRAFT_01276 at 113.109 kb on - strand, within H281DRAFT_01276 at 113.220 kb on - strand at 113.221 kb on + strand at 113.221 kb on + strand at 113.246 kb on - strand at 113.324 kb on + strand at 113.329 kb on - strand at 113.742 kb on - strand, within H281DRAFT_01277 at 114.602 kb on + strand, within H281DRAFT_01277 at 114.603 kb on - strand, within H281DRAFT_01277 at 114.603 kb on - strand, within H281DRAFT_01277 at 114.764 kb on - strand at 114.883 kb on + strand at 114.884 kb on - strand at 115.279 kb on + strand, within H281DRAFT_01278 at 115.339 kb on - strand, within H281DRAFT_01278 at 115.614 kb on - strand, within H281DRAFT_01278 at 115.756 kb on + strand, within H281DRAFT_01278 at 115.757 kb on - strand, within H281DRAFT_01278 at 115.757 kb on - strand, within H281DRAFT_01278
Per-strain Table
Position Strand Gene LocusTag Fraction p-Coumaric (C) remove 112,410 - -2.4 112,623 - H281DRAFT_01276 0.27 -2.1 112,907 + H281DRAFT_01276 0.61 -2.9 112,908 - H281DRAFT_01276 0.61 +0.0 113,109 - H281DRAFT_01276 0.85 -2.0 113,220 - -1.8 113,221 + -2.4 113,221 + -2.0 113,246 - -2.5 113,324 + -3.0 113,329 - -0.9 113,742 - H281DRAFT_01277 0.29 -3.5 114,602 + H281DRAFT_01277 0.89 -4.5 114,603 - H281DRAFT_01277 0.89 -2.5 114,603 - H281DRAFT_01277 0.89 -3.1 114,764 - -0.3 114,883 + -1.3 114,884 - -1.5 115,279 + H281DRAFT_01278 0.21 -1.3 115,339 - H281DRAFT_01278 0.24 -2.1 115,614 - H281DRAFT_01278 0.39 -1.7 115,756 + H281DRAFT_01278 0.46 -5.2 115,757 - H281DRAFT_01278 0.46 -1.1 115,757 - H281DRAFT_01278 0.46 -0.8
Or see this region's nucleotide sequence