Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01274

Experiment: p-Coumaric (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_01273 and H281DRAFT_01274 are separated by 10 nucleotidesH281DRAFT_01274 and H281DRAFT_01275 are separated by 58 nucleotides H281DRAFT_01273: H281DRAFT_01273 - feruloyl esterase, at 107,818 to 109,524 _01273 H281DRAFT_01274: H281DRAFT_01274 - Outer membrane protein (porin), at 109,535 to 110,677 _01274 H281DRAFT_01275: H281DRAFT_01275 - MFS transporter, AAHS family, 3-hydroxyphenylpropionic acid transporter, at 110,736 to 111,977 _01275 Position (kb) 109 110 111Strain fitness (log2 ratio) -1 0 1 2at 109.005 kb on - strand, within H281DRAFT_01273at 109.239 kb on - strand, within H281DRAFT_01273at 109.665 kb on + strand, within H281DRAFT_01274at 109.692 kb on + strand, within H281DRAFT_01274at 109.792 kb on - strand, within H281DRAFT_01274at 109.905 kb on + strand, within H281DRAFT_01274at 110.203 kb on - strand, within H281DRAFT_01274at 110.239 kb on - strand, within H281DRAFT_01274at 110.304 kb on + strand, within H281DRAFT_01274at 111.263 kb on - strand, within H281DRAFT_01275at 111.433 kb on + strand, within H281DRAFT_01275at 111.517 kb on + strandat 111.518 kb on - strand, within H281DRAFT_01275

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction p-Coumaric (C)
remove
109,005 - H281DRAFT_01273 0.70 -0.0
109,239 - H281DRAFT_01273 0.83 +0.0
109,665 + H281DRAFT_01274 0.11 +0.7
109,692 + H281DRAFT_01274 0.14 +1.3
109,792 - H281DRAFT_01274 0.22 +2.0
109,905 + H281DRAFT_01274 0.32 +1.1
110,203 - H281DRAFT_01274 0.58 +1.4
110,239 - H281DRAFT_01274 0.62 +1.1
110,304 + H281DRAFT_01274 0.67 +0.7
111,263 - H281DRAFT_01275 0.42 +1.2
111,433 + H281DRAFT_01275 0.56 +2.0
111,517 + +1.1
111,518 - H281DRAFT_01275 0.63 +1.4

Or see this region's nucleotide sequence