Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01232

Experiment: p-Coumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01230 and H281DRAFT_01231 are separated by 260 nucleotidesH281DRAFT_01231 and H281DRAFT_01232 are separated by 170 nucleotidesH281DRAFT_01232 and H281DRAFT_01233 are separated by 365 nucleotidesH281DRAFT_01233 and H281DRAFT_01234 are separated by 58 nucleotides H281DRAFT_01230: H281DRAFT_01230 - 3-oxoacyl-[acyl-carrier protein] reductase, at 68,566 to 69,318 _01230 H281DRAFT_01231: H281DRAFT_01231 - hypothetical protein, at 69,579 to 69,923 _01231 H281DRAFT_01232: H281DRAFT_01232 - Predicted arabinose efflux permease, MFS family, at 70,094 to 71,356 _01232 H281DRAFT_01233: H281DRAFT_01233 - hypothetical protein, at 71,722 to 71,994 _01233 H281DRAFT_01234: H281DRAFT_01234 - hypothetical protein, at 72,053 to 72,361 _01234 Position (kb) 70 71 72Strain fitness (log2 ratio) -1 0 1 2at 69.362 kb on - strandat 69.395 kb on + strandat 69.397 kb on + strandat 69.397 kb on + strandat 69.398 kb on - strandat 69.666 kb on + strand, within H281DRAFT_01231at 69.841 kb on + strand, within H281DRAFT_01231at 69.842 kb on - strand, within H281DRAFT_01231at 69.968 kb on - strandat 70.013 kb on + strandat 70.015 kb on + strandat 70.019 kb on + strandat 70.096 kb on - strandat 70.367 kb on + strand, within H281DRAFT_01232at 70.626 kb on + strandat 70.627 kb on - strand, within H281DRAFT_01232at 71.058 kb on - strand, within H281DRAFT_01232at 71.162 kb on + strand, within H281DRAFT_01232at 71.341 kb on + strandat 71.351 kb on + strandat 71.352 kb on - strandat 71.356 kb on + strandat 71.356 kb on + strandat 71.356 kb on + strandat 71.357 kb on - strandat 71.357 kb on - strandat 71.360 kb on - strandat 71.411 kb on + strandat 71.412 kb on - strandat 71.442 kb on + strandat 71.468 kb on + strandat 71.530 kb on + strandat 71.531 kb on - strandat 71.542 kb on - strandat 71.687 kb on + strandat 71.804 kb on + strand, within H281DRAFT_01233at 71.835 kb on + strand, within H281DRAFT_01233at 71.835 kb on + strand, within H281DRAFT_01233at 71.836 kb on - strand, within H281DRAFT_01233at 71.836 kb on - strand, within H281DRAFT_01233at 71.836 kb on - strand, within H281DRAFT_01233at 71.836 kb on - strand, within H281DRAFT_01233at 72.042 kb on + strandat 72.100 kb on + strand, within H281DRAFT_01234at 72.101 kb on - strand, within H281DRAFT_01234at 72.148 kb on - strand, within H281DRAFT_01234at 72.191 kb on + strand, within H281DRAFT_01234at 72.191 kb on + strand, within H281DRAFT_01234at 72.191 kb on + strand, within H281DRAFT_01234at 72.192 kb on - strand, within H281DRAFT_01234at 72.192 kb on - strand, within H281DRAFT_01234

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Per-strain Table

Position Strand Gene LocusTag Fraction p-Coumaric (C)
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69,362 - +0.1
69,395 + +0.5
69,397 + -0.2
69,397 + +0.5
69,398 - -0.7
69,666 + H281DRAFT_01231 0.25 +0.3
69,841 + H281DRAFT_01231 0.76 +0.5
69,842 - H281DRAFT_01231 0.76 +0.2
69,968 - +0.6
70,013 + +0.2
70,015 + +0.1
70,019 + +0.2
70,096 - +0.5
70,367 + H281DRAFT_01232 0.22 +0.2
70,626 + +2.0
70,627 - H281DRAFT_01232 0.42 +1.2
71,058 - H281DRAFT_01232 0.76 +0.1
71,162 + H281DRAFT_01232 0.85 +0.4
71,341 + +0.2
71,351 + -0.1
71,352 - -0.2
71,356 + +0.1
71,356 + +0.5
71,356 + +0.1
71,357 - -0.1
71,357 - +0.3
71,360 - +0.0
71,411 + -0.1
71,412 - -0.3
71,442 + -0.1
71,468 + +0.9
71,530 + -0.1
71,531 - -0.1
71,542 - -0.3
71,687 + -0.3
71,804 + H281DRAFT_01233 0.30 +0.3
71,835 + H281DRAFT_01233 0.41 +0.6
71,835 + H281DRAFT_01233 0.41 +0.0
71,836 - H281DRAFT_01233 0.42 -1.4
71,836 - H281DRAFT_01233 0.42 +0.1
71,836 - H281DRAFT_01233 0.42 -0.1
71,836 - H281DRAFT_01233 0.42 +0.1
72,042 + +0.1
72,100 + H281DRAFT_01234 0.15 +0.2
72,101 - H281DRAFT_01234 0.16 -0.3
72,148 - H281DRAFT_01234 0.31 -0.1
72,191 + H281DRAFT_01234 0.45 +0.5
72,191 + H281DRAFT_01234 0.45 +0.8
72,191 + H281DRAFT_01234 0.45 +0.1
72,192 - H281DRAFT_01234 0.45 +1.2
72,192 - H281DRAFT_01234 0.45 +0.3

Or see this region's nucleotide sequence