Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00799

Experiment: p-Coumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00798 and H281DRAFT_00799 are separated by 203 nucleotidesH281DRAFT_00799 and H281DRAFT_00800 are separated by 355 nucleotides H281DRAFT_00798: H281DRAFT_00798 - Cell wall-associated hydrolase, NlpC family, at 884,230 to 885,471 _00798 H281DRAFT_00799: H281DRAFT_00799 - PhoH-like ATPase, at 885,675 to 887,537 _00799 H281DRAFT_00800: H281DRAFT_00800 - peroxiredoxin Q/BCP, at 887,893 to 888,354 _00800 Position (kb) 885 886 887 888Strain fitness (log2 ratio) -2 -1 0 1at 884.897 kb on + strand, within H281DRAFT_00798at 884.898 kb on - strand, within H281DRAFT_00798at 884.901 kb on + strand, within H281DRAFT_00798at 884.901 kb on + strand, within H281DRAFT_00798at 884.902 kb on - strand, within H281DRAFT_00798at 885.051 kb on - strand, within H281DRAFT_00798at 885.051 kb on - strand, within H281DRAFT_00798at 885.051 kb on - strand, within H281DRAFT_00798at 885.200 kb on + strand, within H281DRAFT_00798at 885.200 kb on + strand, within H281DRAFT_00798at 885.200 kb on + strand, within H281DRAFT_00798at 885.201 kb on - strand, within H281DRAFT_00798at 885.289 kb on - strand, within H281DRAFT_00798at 885.775 kb on + strandat 885.775 kb on + strandat 885.776 kb on - strandat 885.776 kb on - strandat 885.776 kb on - strandat 885.776 kb on - strandat 885.776 kb on - strandat 885.776 kb on - strandat 885.805 kb on + strandat 885.925 kb on + strand, within H281DRAFT_00799at 885.926 kb on - strand, within H281DRAFT_00799at 885.926 kb on - strand, within H281DRAFT_00799at 885.962 kb on + strand, within H281DRAFT_00799at 885.963 kb on - strand, within H281DRAFT_00799at 885.963 kb on - strand, within H281DRAFT_00799at 886.168 kb on + strand, within H281DRAFT_00799at 886.168 kb on + strand, within H281DRAFT_00799at 886.168 kb on + strand, within H281DRAFT_00799at 886.168 kb on + strand, within H281DRAFT_00799at 886.348 kb on + strand, within H281DRAFT_00799at 886.368 kb on + strand, within H281DRAFT_00799at 886.492 kb on + strand, within H281DRAFT_00799at 886.492 kb on + strand, within H281DRAFT_00799at 886.492 kb on + strand, within H281DRAFT_00799at 886.493 kb on - strand, within H281DRAFT_00799at 886.493 kb on - strand, within H281DRAFT_00799at 886.496 kb on + strand, within H281DRAFT_00799at 886.496 kb on + strand, within H281DRAFT_00799at 886.496 kb on + strand, within H281DRAFT_00799at 886.497 kb on - strand, within H281DRAFT_00799at 886.622 kb on - strand, within H281DRAFT_00799at 886.946 kb on + strand, within H281DRAFT_00799at 886.946 kb on + strand, within H281DRAFT_00799at 886.946 kb on + strand, within H281DRAFT_00799at 886.947 kb on - strand, within H281DRAFT_00799at 886.947 kb on - strand, within H281DRAFT_00799at 886.984 kb on + strand, within H281DRAFT_00799at 886.984 kb on + strand, within H281DRAFT_00799at 886.984 kb on + strand, within H281DRAFT_00799at 886.985 kb on - strand, within H281DRAFT_00799at 887.405 kb on - strandat 887.482 kb on + strandat 887.482 kb on + strandat 887.482 kb on + strandat 887.483 kb on - strandat 887.553 kb on - strandat 887.566 kb on - strandat 887.643 kb on - strandat 887.745 kb on - strandat 887.745 kb on - strandat 887.884 kb on + strandat 887.884 kb on + strandat 887.885 kb on - strandat 887.906 kb on - strandat 888.013 kb on + strand, within H281DRAFT_00800at 888.013 kb on + strand, within H281DRAFT_00800at 888.027 kb on - strand, within H281DRAFT_00800at 888.254 kb on + strand, within H281DRAFT_00800at 888.254 kb on + strand, within H281DRAFT_00800at 888.255 kb on - strand, within H281DRAFT_00800at 888.255 kb on - strand, within H281DRAFT_00800at 888.371 kb on + strandat 888.371 kb on + strandat 888.371 kb on + strandat 888.372 kb on - strandat 888.374 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction p-Coumaric (C)
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884,897 + H281DRAFT_00798 0.54 -1.1
884,898 - H281DRAFT_00798 0.54 -0.4
884,901 + H281DRAFT_00798 0.54 +0.3
884,901 + H281DRAFT_00798 0.54 -0.2
884,902 - H281DRAFT_00798 0.54 +0.0
885,051 - H281DRAFT_00798 0.66 +1.3
885,051 - H281DRAFT_00798 0.66 +0.6
885,051 - H281DRAFT_00798 0.66 -0.8
885,200 + H281DRAFT_00798 0.78 -0.3
885,200 + H281DRAFT_00798 0.78 -0.1
885,200 + H281DRAFT_00798 0.78 +0.2
885,201 - H281DRAFT_00798 0.78 +0.3
885,289 - H281DRAFT_00798 0.85 +0.3
885,775 + -0.7
885,775 + -0.6
885,776 - -0.2
885,776 - -0.7
885,776 - -1.3
885,776 - -0.9
885,776 - -1.3
885,776 - -1.1
885,805 + +0.1
885,925 + H281DRAFT_00799 0.13 -1.0
885,926 - H281DRAFT_00799 0.13 -2.1
885,926 - H281DRAFT_00799 0.13 -1.8
885,962 + H281DRAFT_00799 0.15 -1.1
885,963 - H281DRAFT_00799 0.15 -1.9
885,963 - H281DRAFT_00799 0.15 -0.7
886,168 + H281DRAFT_00799 0.26 +0.0
886,168 + H281DRAFT_00799 0.26 -1.1
886,168 + H281DRAFT_00799 0.26 -1.5
886,168 + H281DRAFT_00799 0.26 -1.7
886,348 + H281DRAFT_00799 0.36 -1.6
886,368 + H281DRAFT_00799 0.37 -1.1
886,492 + H281DRAFT_00799 0.44 -0.9
886,492 + H281DRAFT_00799 0.44 -0.3
886,492 + H281DRAFT_00799 0.44 -1.2
886,493 - H281DRAFT_00799 0.44 -1.4
886,493 - H281DRAFT_00799 0.44 -0.7
886,496 + H281DRAFT_00799 0.44 -0.4
886,496 + H281DRAFT_00799 0.44 -1.2
886,496 + H281DRAFT_00799 0.44 -0.9
886,497 - H281DRAFT_00799 0.44 -1.3
886,622 - H281DRAFT_00799 0.51 -1.0
886,946 + H281DRAFT_00799 0.68 -1.3
886,946 + H281DRAFT_00799 0.68 -0.3
886,946 + H281DRAFT_00799 0.68 -0.8
886,947 - H281DRAFT_00799 0.68 -2.0
886,947 - H281DRAFT_00799 0.68 -1.9
886,984 + H281DRAFT_00799 0.70 +0.3
886,984 + H281DRAFT_00799 0.70 -0.8
886,984 + H281DRAFT_00799 0.70 -0.7
886,985 - H281DRAFT_00799 0.70 -1.1
887,405 - -0.7
887,482 + -0.8
887,482 + -0.1
887,482 + -2.0
887,483 - -1.3
887,553 - -0.7
887,566 - -0.3
887,643 - -0.3
887,745 - -0.3
887,745 - -0.0
887,884 + -1.7
887,884 + -0.8
887,885 - -0.4
887,906 - -0.1
888,013 + H281DRAFT_00800 0.26 -0.3
888,013 + H281DRAFT_00800 0.26 -0.3
888,027 - H281DRAFT_00800 0.29 -0.1
888,254 + H281DRAFT_00800 0.78 +0.5
888,254 + H281DRAFT_00800 0.78 -0.2
888,255 - H281DRAFT_00800 0.78 +0.2
888,255 - H281DRAFT_00800 0.78 +0.0
888,371 + -0.9
888,371 + +1.1
888,371 + -0.8
888,372 - +0.8
888,374 - +0.2

Or see this region's nucleotide sequence