Experiment: p-Coumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00176 and H281DRAFT_00177 are separated by 83 nucleotides H281DRAFT_00177 and H281DRAFT_00178 are separated by 193 nucleotides
H281DRAFT_00176: H281DRAFT_00176 - outer membrane lipoprotein carrier protein, at 190,140 to 190,868
_00176
H281DRAFT_00177: H281DRAFT_00177 - transcriptional regulator, LysR family, at 190,952 to 191,863
_00177
H281DRAFT_00178: H281DRAFT_00178 - agmatinase, at 192,057 to 193,046
_00178
Position (kb) 190
191
192 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 190.147 kb on + strand at 190.147 kb on + strand at 190.148 kb on - strand at 190.512 kb on + strand, within H281DRAFT_00176 at 190.757 kb on - strand, within H281DRAFT_00176 at 190.934 kb on + strand at 190.935 kb on - strand at 190.988 kb on - strand at 191.020 kb on + strand at 191.044 kb on + strand, within H281DRAFT_00177 at 191.045 kb on - strand, within H281DRAFT_00177 at 191.045 kb on - strand, within H281DRAFT_00177 at 191.069 kb on + strand, within H281DRAFT_00177 at 191.069 kb on + strand, within H281DRAFT_00177 at 191.070 kb on - strand, within H281DRAFT_00177 at 191.070 kb on - strand, within H281DRAFT_00177 at 191.244 kb on + strand, within H281DRAFT_00177 at 191.244 kb on + strand, within H281DRAFT_00177 at 191.245 kb on - strand, within H281DRAFT_00177 at 191.364 kb on + strand, within H281DRAFT_00177 at 191.364 kb on + strand, within H281DRAFT_00177 at 191.364 kb on + strand, within H281DRAFT_00177 at 191.429 kb on + strand, within H281DRAFT_00177 at 191.515 kb on + strand, within H281DRAFT_00177 at 191.515 kb on + strand, within H281DRAFT_00177 at 191.515 kb on + strand, within H281DRAFT_00177 at 191.516 kb on - strand, within H281DRAFT_00177 at 191.917 kb on - strand at 192.062 kb on + strand at 192.295 kb on - strand, within H281DRAFT_00178 at 192.295 kb on - strand, within H281DRAFT_00178 at 192.370 kb on - strand, within H281DRAFT_00178 at 192.418 kb on + strand, within H281DRAFT_00178 at 192.419 kb on - strand, within H281DRAFT_00178 at 192.419 kb on - strand, within H281DRAFT_00178 at 192.419 kb on - strand, within H281DRAFT_00178 at 192.660 kb on + strand, within H281DRAFT_00178 at 192.789 kb on + strand, within H281DRAFT_00178 at 192.789 kb on + strand, within H281DRAFT_00178 at 192.790 kb on - strand, within H281DRAFT_00178 at 192.791 kb on + strand, within H281DRAFT_00178
Per-strain Table
Position Strand Gene LocusTag Fraction p-Coumaric (C) remove 190,147 + -1.1 190,147 + -0.8 190,148 - -0.1 190,512 + H281DRAFT_00176 0.51 -2.2 190,757 - H281DRAFT_00176 0.85 -3.0 190,934 + -0.4 190,935 - -0.1 190,988 - -0.7 191,020 + +2.2 191,044 + H281DRAFT_00177 0.10 +1.1 191,045 - H281DRAFT_00177 0.10 +1.2 191,045 - H281DRAFT_00177 0.10 +0.2 191,069 + H281DRAFT_00177 0.13 +0.2 191,069 + H281DRAFT_00177 0.13 -0.6 191,070 - H281DRAFT_00177 0.13 +0.0 191,070 - H281DRAFT_00177 0.13 -1.1 191,244 + H281DRAFT_00177 0.32 -0.0 191,244 + H281DRAFT_00177 0.32 -0.0 191,245 - H281DRAFT_00177 0.32 +0.0 191,364 + H281DRAFT_00177 0.45 -0.6 191,364 + H281DRAFT_00177 0.45 -0.3 191,364 + H281DRAFT_00177 0.45 +1.4 191,429 + H281DRAFT_00177 0.52 -0.2 191,515 + H281DRAFT_00177 0.62 -0.4 191,515 + H281DRAFT_00177 0.62 -0.1 191,515 + H281DRAFT_00177 0.62 +0.3 191,516 - H281DRAFT_00177 0.62 -0.3 191,917 - +1.0 192,062 + -0.3 192,295 - H281DRAFT_00178 0.24 +0.0 192,295 - H281DRAFT_00178 0.24 -0.5 192,370 - H281DRAFT_00178 0.32 +0.7 192,418 + H281DRAFT_00178 0.36 +0.3 192,419 - H281DRAFT_00178 0.37 +0.1 192,419 - H281DRAFT_00178 0.37 +0.8 192,419 - H281DRAFT_00178 0.37 -0.9 192,660 + H281DRAFT_00178 0.61 -0.2 192,789 + H281DRAFT_00178 0.74 -1.0 192,789 + H281DRAFT_00178 0.74 +0.3 192,790 - H281DRAFT_00178 0.74 +0.1 192,791 + H281DRAFT_00178 0.74 +0.0
Or see this region's nucleotide sequence