Experiment: m.b. nitrite 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_910 and HP15_911 are separated by 3 nucleotides HP15_911 and HP15_912 are separated by 132 nucleotides HP15_912 and HP15_913 overlap by 22 nucleotides HP15_913 and HP15_914 overlap by 1 nucleotides
HP15_910: HP15_910 - 3-hydroxyisobutyrate dehydrogenase, at 922,258 to 923,145
_910
HP15_911: HP15_911 - conserved hypothetical protein, at 923,149 to 923,481
_911
HP15_912: HP15_912 - type VI secretion system Vgr family protein, at 923,614 to 925,734
_912
HP15_913: HP15_913 - conserved hypothetical protein, at 925,713 to 926,525
_913
HP15_914: HP15_914 - peptidoglycan-binding LysM, at 926,525 to 928,642
_914
Position (kb) 923
924
925
926 Strain fitness (log2 ratio) -1
0
1
2 at 922.647 kb on - strand, within HP15_910 at 922.673 kb on + strand, within HP15_910 at 922.940 kb on - strand, within HP15_910 at 922.996 kb on + strand, within HP15_910 at 923.078 kb on - strand at 923.089 kb on - strand at 923.100 kb on - strand at 923.130 kb on + strand at 923.130 kb on + strand at 923.263 kb on + strand, within HP15_911 at 923.265 kb on + strand, within HP15_911 at 923.325 kb on - strand, within HP15_911 at 923.367 kb on + strand, within HP15_911 at 923.408 kb on + strand, within HP15_911 at 923.414 kb on - strand, within HP15_911 at 923.458 kb on - strand at 923.490 kb on - strand at 923.734 kb on + strand at 923.747 kb on - strand at 923.747 kb on - strand at 923.747 kb on - strand at 923.752 kb on - strand at 923.812 kb on - strand at 923.961 kb on - strand, within HP15_912 at 924.032 kb on + strand, within HP15_912 at 924.093 kb on + strand, within HP15_912 at 924.106 kb on - strand, within HP15_912 at 924.108 kb on - strand, within HP15_912 at 924.108 kb on - strand, within HP15_912 at 924.130 kb on - strand, within HP15_912 at 924.370 kb on - strand, within HP15_912 at 924.408 kb on + strand, within HP15_912 at 924.603 kb on + strand, within HP15_912 at 924.603 kb on + strand, within HP15_912 at 924.611 kb on - strand, within HP15_912 at 924.612 kb on + strand, within HP15_912 at 924.647 kb on + strand, within HP15_912 at 924.652 kb on - strand, within HP15_912 at 924.657 kb on + strand, within HP15_912 at 924.676 kb on + strand, within HP15_912 at 924.714 kb on + strand, within HP15_912 at 924.778 kb on - strand, within HP15_912 at 924.856 kb on + strand, within HP15_912 at 924.856 kb on + strand, within HP15_912 at 924.884 kb on + strand, within HP15_912 at 924.922 kb on - strand, within HP15_912 at 924.972 kb on - strand, within HP15_912 at 925.003 kb on - strand, within HP15_912 at 925.194 kb on - strand, within HP15_912 at 925.444 kb on - strand, within HP15_912 at 925.454 kb on - strand, within HP15_912 at 925.480 kb on + strand, within HP15_912 at 925.501 kb on - strand, within HP15_912 at 925.728 kb on - strand at 925.885 kb on + strand, within HP15_913 at 925.885 kb on + strand, within HP15_913 at 925.893 kb on - strand, within HP15_913 at 925.893 kb on - strand, within HP15_913 at 925.896 kb on + strand, within HP15_913 at 925.912 kb on - strand, within HP15_913 at 925.919 kb on + strand, within HP15_913 at 925.961 kb on - strand, within HP15_913 at 925.979 kb on - strand, within HP15_913 at 926.017 kb on + strand, within HP15_913 at 926.089 kb on - strand, within HP15_913 at 926.130 kb on + strand, within HP15_913 at 926.130 kb on + strand, within HP15_913 at 926.392 kb on + strand, within HP15_913 at 926.392 kb on + strand, within HP15_913 at 926.410 kb on - strand, within HP15_913 at 926.423 kb on + strand, within HP15_913 at 926.466 kb on - strand at 926.483 kb on + strand at 926.491 kb on - strand at 926.573 kb on + strand at 926.599 kb on - strand at 926.599 kb on - strand at 926.599 kb on - strand at 926.644 kb on - strand at 926.733 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 10 mM remove 922,647 - HP15_910 0.44 -0.6 922,673 + HP15_910 0.47 -1.0 922,940 - HP15_910 0.77 -0.0 922,996 + HP15_910 0.83 -0.5 923,078 - -0.5 923,089 - -0.0 923,100 - -0.2 923,130 + +0.2 923,130 + -0.3 923,263 + HP15_911 0.34 -0.2 923,265 + HP15_911 0.35 -1.2 923,325 - HP15_911 0.53 -0.7 923,367 + HP15_911 0.65 +0.2 923,408 + HP15_911 0.78 +1.9 923,414 - HP15_911 0.80 +0.0 923,458 - +0.3 923,490 - -0.2 923,734 + +0.4 923,747 - -1.3 923,747 - -0.4 923,747 - +0.9 923,752 - -0.1 923,812 - +0.4 923,961 - HP15_912 0.16 +0.4 924,032 + HP15_912 0.20 +0.6 924,093 + HP15_912 0.23 +0.1 924,106 - HP15_912 0.23 +0.6 924,108 - HP15_912 0.23 +0.9 924,108 - HP15_912 0.23 +0.1 924,130 - HP15_912 0.24 +0.2 924,370 - HP15_912 0.36 -0.1 924,408 + HP15_912 0.37 +0.4 924,603 + HP15_912 0.47 -0.1 924,603 + HP15_912 0.47 -0.2 924,611 - HP15_912 0.47 +0.5 924,612 + HP15_912 0.47 +0.0 924,647 + HP15_912 0.49 +1.6 924,652 - HP15_912 0.49 -0.5 924,657 + HP15_912 0.49 -0.1 924,676 + HP15_912 0.50 +0.3 924,714 + HP15_912 0.52 +0.4 924,778 - HP15_912 0.55 -0.4 924,856 + HP15_912 0.59 +0.1 924,856 + HP15_912 0.59 +0.6 924,884 + HP15_912 0.60 +0.2 924,922 - HP15_912 0.62 +1.2 924,972 - HP15_912 0.64 +0.2 925,003 - HP15_912 0.65 -0.4 925,194 - HP15_912 0.74 +0.2 925,444 - HP15_912 0.86 +1.6 925,454 - HP15_912 0.87 -0.1 925,480 + HP15_912 0.88 +0.8 925,501 - HP15_912 0.89 -0.2 925,728 - -0.5 925,885 + HP15_913 0.21 +0.3 925,885 + HP15_913 0.21 -0.2 925,893 - HP15_913 0.22 -0.3 925,893 - HP15_913 0.22 -0.8 925,896 + HP15_913 0.23 -0.2 925,912 - HP15_913 0.24 +0.0 925,919 + HP15_913 0.25 -0.1 925,961 - HP15_913 0.31 -0.1 925,979 - HP15_913 0.33 -0.6 926,017 + HP15_913 0.37 +0.2 926,089 - HP15_913 0.46 -0.8 926,130 + HP15_913 0.51 -0.0 926,130 + HP15_913 0.51 +0.1 926,392 + HP15_913 0.84 +1.2 926,392 + HP15_913 0.84 -0.1 926,410 - HP15_913 0.86 +0.6 926,423 + HP15_913 0.87 -1.2 926,466 - +0.3 926,483 + -0.7 926,491 - -0.1 926,573 + +0.2 926,599 - -0.2 926,599 - -0.3 926,599 - -0.1 926,644 - +0.4 926,733 + +0.0
Or see this region's nucleotide sequence