Experiment: m.b. nitrite 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_680 and HP15_681 are separated by 86 nucleotides HP15_681 and HP15_682 overlap by 11 nucleotides HP15_682 and HP15_683 overlap by 4 nucleotides HP15_683 and HP15_684 are separated by 23 nucleotides
HP15_680: HP15_680 - conserved hypothetical protein, at 697,421 to 697,642
_680
HP15_681: HP15_681 - conserved hypothetical protein, at 697,729 to 698,403
_681
HP15_682: HP15_682 - replication protein O, at 698,393 to 699,406
_682
HP15_683: HP15_683 - conserved hypothetical protein, at 699,403 to 700,191
_683
HP15_684: HP15_684 - hypothetical protein, at 700,215 to 700,508
_684
Position (kb) 698
699
700 Strain fitness (log2 ratio) -2
-1
0
1 at 697.670 kb on + strand at 697.747 kb on - strand at 697.793 kb on - strand at 697.808 kb on - strand, within HP15_681 at 697.844 kb on - strand, within HP15_681 at 697.919 kb on + strand, within HP15_681 at 697.934 kb on - strand, within HP15_681 at 697.955 kb on - strand, within HP15_681 at 697.969 kb on - strand, within HP15_681 at 698.119 kb on - strand, within HP15_681 at 698.153 kb on + strand, within HP15_681 at 698.153 kb on + strand, within HP15_681 at 698.158 kb on + strand, within HP15_681 at 698.165 kb on + strand, within HP15_681 at 698.185 kb on + strand, within HP15_681 at 698.193 kb on - strand, within HP15_681 at 698.213 kb on + strand, within HP15_681 at 698.213 kb on + strand, within HP15_681 at 698.234 kb on + strand, within HP15_681 at 698.242 kb on - strand, within HP15_681 at 698.329 kb on - strand, within HP15_681 at 698.342 kb on + strand at 698.358 kb on + strand at 698.398 kb on + strand at 698.405 kb on + strand at 698.406 kb on - strand at 698.497 kb on + strand, within HP15_682 at 698.523 kb on - strand, within HP15_682 at 698.573 kb on + strand, within HP15_682 at 698.612 kb on + strand, within HP15_682 at 698.620 kb on + strand, within HP15_682 at 698.675 kb on + strand, within HP15_682 at 698.690 kb on - strand, within HP15_682 at 698.774 kb on + strand, within HP15_682 at 698.803 kb on + strand, within HP15_682 at 698.808 kb on + strand, within HP15_682 at 698.816 kb on - strand, within HP15_682 at 698.816 kb on - strand, within HP15_682 at 698.848 kb on - strand, within HP15_682 at 698.848 kb on - strand, within HP15_682 at 698.891 kb on - strand, within HP15_682 at 698.915 kb on - strand, within HP15_682 at 698.915 kb on - strand, within HP15_682 at 698.917 kb on + strand, within HP15_682 at 699.125 kb on - strand, within HP15_682 at 699.125 kb on - strand, within HP15_682 at 699.242 kb on - strand, within HP15_682 at 699.352 kb on - strand at 699.719 kb on + strand, within HP15_683 at 699.752 kb on + strand, within HP15_683 at 699.752 kb on + strand, within HP15_683 at 699.760 kb on - strand, within HP15_683 at 699.827 kb on + strand, within HP15_683 at 699.875 kb on - strand, within HP15_683 at 699.878 kb on + strand, within HP15_683 at 699.921 kb on - strand, within HP15_683 at 700.116 kb on + strand at 700.121 kb on + strand at 700.174 kb on + strand at 700.227 kb on + strand at 700.290 kb on + strand, within HP15_684 at 700.354 kb on + strand, within HP15_684
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 10 mM remove 697,670 + +0.4 697,747 - +0.6 697,793 - +0.1 697,808 - HP15_681 0.12 -0.2 697,844 - HP15_681 0.17 -2.5 697,919 + HP15_681 0.28 -0.5 697,934 - HP15_681 0.30 -0.0 697,955 - HP15_681 0.33 -0.3 697,969 - HP15_681 0.36 +0.0 698,119 - HP15_681 0.58 -1.3 698,153 + HP15_681 0.63 -0.5 698,153 + HP15_681 0.63 -0.0 698,158 + HP15_681 0.64 +0.2 698,165 + HP15_681 0.65 +0.1 698,185 + HP15_681 0.68 -0.6 698,193 - HP15_681 0.69 -1.9 698,213 + HP15_681 0.72 -0.5 698,213 + HP15_681 0.72 -0.1 698,234 + HP15_681 0.75 -0.2 698,242 - HP15_681 0.76 +0.2 698,329 - HP15_681 0.89 -0.1 698,342 + +0.5 698,358 + +0.4 698,398 + -0.6 698,405 + +0.1 698,406 - +1.1 698,497 + HP15_682 0.10 -0.4 698,523 - HP15_682 0.13 +0.2 698,573 + HP15_682 0.18 -0.4 698,612 + HP15_682 0.22 -0.2 698,620 + HP15_682 0.22 -0.2 698,675 + HP15_682 0.28 -0.6 698,690 - HP15_682 0.29 -0.6 698,774 + HP15_682 0.38 +0.5 698,803 + HP15_682 0.40 +0.0 698,808 + HP15_682 0.41 -0.3 698,816 - HP15_682 0.42 -0.1 698,816 - HP15_682 0.42 -0.3 698,848 - HP15_682 0.45 -1.4 698,848 - HP15_682 0.45 +0.3 698,891 - HP15_682 0.49 -1.0 698,915 - HP15_682 0.51 +0.6 698,915 - HP15_682 0.51 -0.1 698,917 + HP15_682 0.52 -0.5 699,125 - HP15_682 0.72 -0.1 699,125 - HP15_682 0.72 -0.2 699,242 - HP15_682 0.84 -0.4 699,352 - -0.7 699,719 + HP15_683 0.40 -0.3 699,752 + HP15_683 0.44 -0.7 699,752 + HP15_683 0.44 -1.0 699,760 - HP15_683 0.45 -0.3 699,827 + HP15_683 0.54 +0.6 699,875 - HP15_683 0.60 -0.0 699,878 + HP15_683 0.60 +0.1 699,921 - HP15_683 0.66 -0.1 700,116 + -1.3 700,121 + -0.4 700,174 + -0.5 700,227 + -0.3 700,290 + HP15_684 0.26 +0.2 700,354 + HP15_684 0.47 -0.5
Or see this region's nucleotide sequence