Experiment: m.b. nitrite 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_673 and HP15_674 overlap by 11 nucleotides HP15_674 and HP15_675 are separated by 117 nucleotides HP15_675 and HP15_676 are separated by 11 nucleotides HP15_676 and HP15_677 are separated by 3 nucleotides
HP15_673: HP15_673 - phage terminase GpA, at 692,685 to 694,646
_673
HP15_674: HP15_674 - phage-related packaging protein, at 694,636 to 695,154
_674
HP15_675: HP15_675 - conserved hypothetical protein, at 695,272 to 695,703
_675
HP15_676: HP15_676 - N-acetylmuramoyl-L-alanine amidase, at 695,715 to 696,140
_676
HP15_677: HP15_677 - hypothetical protein, at 696,144 to 696,452
_677
Position (kb) 694
695
696 Strain fitness (log2 ratio) -1
0
1
2 at 693.654 kb on + strand, within HP15_673 at 693.696 kb on - strand, within HP15_673 at 693.696 kb on - strand, within HP15_673 at 693.905 kb on - strand, within HP15_673 at 693.921 kb on - strand, within HP15_673 at 693.957 kb on - strand, within HP15_673 at 694.022 kb on + strand, within HP15_673 at 694.105 kb on + strand, within HP15_673 at 694.113 kb on - strand, within HP15_673 at 694.113 kb on - strand, within HP15_673 at 694.166 kb on - strand, within HP15_673 at 694.186 kb on + strand, within HP15_673 at 694.219 kb on - strand, within HP15_673 at 694.258 kb on - strand, within HP15_673 at 694.387 kb on + strand, within HP15_673 at 694.405 kb on - strand, within HP15_673 at 694.410 kb on - strand, within HP15_673 at 694.410 kb on - strand, within HP15_673 at 694.410 kb on - strand, within HP15_673 at 694.461 kb on - strand at 694.480 kb on + strand at 694.546 kb on + strand at 694.546 kb on + strand at 694.549 kb on - strand at 694.554 kb on - strand at 694.554 kb on - strand at 694.556 kb on + strand at 694.641 kb on - strand at 694.666 kb on - strand at 694.728 kb on - strand, within HP15_674 at 694.730 kb on + strand, within HP15_674 at 694.745 kb on + strand, within HP15_674 at 694.749 kb on - strand, within HP15_674 at 694.826 kb on + strand, within HP15_674 at 694.834 kb on - strand, within HP15_674 at 694.961 kb on + strand, within HP15_674 at 695.043 kb on - strand, within HP15_674 at 695.123 kb on - strand at 695.128 kb on - strand at 695.143 kb on - strand at 695.167 kb on - strand at 695.227 kb on + strand at 695.233 kb on + strand at 695.233 kb on - strand at 695.250 kb on - strand at 695.271 kb on + strand at 695.320 kb on - strand, within HP15_675 at 695.322 kb on + strand, within HP15_675 at 695.426 kb on - strand, within HP15_675 at 695.532 kb on + strand, within HP15_675 at 695.537 kb on + strand, within HP15_675 at 695.571 kb on - strand, within HP15_675 at 695.603 kb on + strand, within HP15_675 at 695.609 kb on + strand, within HP15_675 at 695.617 kb on - strand, within HP15_675 at 695.659 kb on - strand, within HP15_675 at 695.710 kb on + strand at 695.766 kb on - strand, within HP15_676 at 695.801 kb on + strand, within HP15_676 at 695.860 kb on + strand, within HP15_676 at 695.860 kb on + strand, within HP15_676 at 695.914 kb on - strand, within HP15_676 at 695.957 kb on + strand, within HP15_676 at 695.957 kb on - strand, within HP15_676 at 696.085 kb on + strand, within HP15_676 at 696.092 kb on + strand, within HP15_676
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 10 mM remove 693,654 + HP15_673 0.49 +0.9 693,696 - HP15_673 0.52 +2.4 693,696 - HP15_673 0.52 +1.0 693,905 - HP15_673 0.62 +0.7 693,921 - HP15_673 0.63 +0.4 693,957 - HP15_673 0.65 -0.4 694,022 + HP15_673 0.68 +1.2 694,105 + HP15_673 0.72 +0.7 694,113 - HP15_673 0.73 -0.5 694,113 - HP15_673 0.73 -0.3 694,166 - HP15_673 0.75 +1.3 694,186 + HP15_673 0.77 +1.3 694,219 - HP15_673 0.78 +0.3 694,258 - HP15_673 0.80 +1.0 694,387 + HP15_673 0.87 +0.5 694,405 - HP15_673 0.88 +1.2 694,410 - HP15_673 0.88 +0.1 694,410 - HP15_673 0.88 +0.3 694,410 - HP15_673 0.88 +2.1 694,461 - +0.8 694,480 + +0.8 694,546 + +1.5 694,546 + +1.1 694,549 - +0.6 694,554 - +0.5 694,554 - +0.0 694,556 + +1.3 694,641 - +0.3 694,666 - +1.2 694,728 - HP15_674 0.18 +0.7 694,730 + HP15_674 0.18 +0.2 694,745 + HP15_674 0.21 +0.9 694,749 - HP15_674 0.22 +2.6 694,826 + HP15_674 0.37 +1.2 694,834 - HP15_674 0.38 +1.1 694,961 + HP15_674 0.63 -0.5 695,043 - HP15_674 0.78 +1.2 695,123 - -0.1 695,128 - +0.5 695,143 - +0.5 695,167 - +0.5 695,227 + +0.7 695,233 + +1.3 695,233 - -0.5 695,250 - +0.1 695,271 + +0.7 695,320 - HP15_675 0.11 +1.1 695,322 + HP15_675 0.12 +0.5 695,426 - HP15_675 0.36 +0.7 695,532 + HP15_675 0.60 +0.8 695,537 + HP15_675 0.61 +0.3 695,571 - HP15_675 0.69 +0.8 695,603 + HP15_675 0.77 +0.3 695,609 + HP15_675 0.78 +0.5 695,617 - HP15_675 0.80 +0.5 695,659 - HP15_675 0.90 +0.3 695,710 + +1.3 695,766 - HP15_676 0.12 +1.2 695,801 + HP15_676 0.20 +0.3 695,860 + HP15_676 0.34 +0.1 695,860 + HP15_676 0.34 +0.8 695,914 - HP15_676 0.47 +1.1 695,957 + HP15_676 0.57 +0.3 695,957 - HP15_676 0.57 -0.3 696,085 + HP15_676 0.87 +0.7 696,092 + HP15_676 0.88 +0.7
Or see this region's nucleotide sequence