Experiment: m.b. Chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01590 and PGA1_262p01600 are separated by 6 nucleotides PGA1_262p01600 and PGA1_262p01610 overlap by 4 nucleotides PGA1_262p01610 and PGA1_262p01620 are separated by 27 nucleotides PGA1_262p01620 and PGA1_262p01630 are separated by 68 nucleotides
PGA1_262p01590: PGA1_262p01590 - Protein of unknown function (DUF2796)., at 176,259 to 176,930
_262p01590
PGA1_262p01600: PGA1_262p01600 - putative ABC transporter, ATP binding protein, at 176,937 to 177,632
_262p01600
PGA1_262p01610: PGA1_262p01610 - putative ABC transporter, permease protein, at 177,629 to 178,879
_262p01610
PGA1_262p01620: PGA1_262p01620 - Uncharacterized protein conserved in bacteria, at 178,907 to 179,407
_262p01620
PGA1_262p01630: PGA1_262p01630 - hypothetical protein, at 179,476 to 179,721
_262p01630
Position (kb) 177
178
179 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 176.640 kb on - strand, within PGA1_262p01590 at 176.777 kb on - strand, within PGA1_262p01590 at 176.851 kb on + strand, within PGA1_262p01590 at 176.937 kb on - strand at 176.939 kb on - strand at 177.189 kb on + strand, within PGA1_262p01600 at 177.376 kb on + strand, within PGA1_262p01600 at 177.430 kb on - strand, within PGA1_262p01600 at 177.461 kb on - strand, within PGA1_262p01600 at 177.527 kb on - strand, within PGA1_262p01600 at 177.667 kb on + strand at 177.681 kb on + strand at 177.747 kb on + strand at 177.805 kb on + strand, within PGA1_262p01610 at 177.810 kb on + strand, within PGA1_262p01610 at 177.810 kb on + strand, within PGA1_262p01610 at 177.818 kb on - strand, within PGA1_262p01610 at 177.826 kb on + strand, within PGA1_262p01610 at 177.834 kb on - strand, within PGA1_262p01610 at 177.834 kb on - strand, within PGA1_262p01610 at 177.869 kb on + strand, within PGA1_262p01610 at 178.136 kb on - strand, within PGA1_262p01610 at 178.214 kb on + strand, within PGA1_262p01610 at 178.343 kb on + strand, within PGA1_262p01610 at 178.606 kb on + strand, within PGA1_262p01610 at 178.664 kb on - strand, within PGA1_262p01610 at 178.715 kb on + strand, within PGA1_262p01610 at 178.755 kb on + strand at 178.755 kb on + strand at 178.758 kb on - strand at 178.763 kb on - strand at 178.881 kb on + strand at 178.894 kb on - strand at 178.947 kb on - strand at 179.050 kb on - strand, within PGA1_262p01620 at 179.253 kb on + strand, within PGA1_262p01620 at 179.310 kb on + strand, within PGA1_262p01620 at 179.310 kb on + strand, within PGA1_262p01620 at 179.310 kb on + strand, within PGA1_262p01620 at 179.461 kb on + strand at 179.469 kb on - strand at 179.509 kb on + strand, within PGA1_262p01630 at 179.570 kb on + strand, within PGA1_262p01630 at 179.574 kb on - strand, within PGA1_262p01630 at 179.651 kb on + strand, within PGA1_262p01630 at 179.651 kb on + strand, within PGA1_262p01630 at 179.713 kb on + strand at 179.750 kb on - strand at 179.750 kb on - strand at 179.795 kb on + strand at 179.796 kb on + strand at 179.798 kb on - strand at 179.806 kb on + strand at 179.836 kb on + strand at 179.836 kb on - strand at 179.844 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 0.16 mM remove 176,640 - PGA1_262p01590 0.57 -1.1 176,777 - PGA1_262p01590 0.77 +0.8 176,851 + PGA1_262p01590 0.88 -0.8 176,937 - +0.6 176,939 - -1.7 177,189 + PGA1_262p01600 0.36 +0.2 177,376 + PGA1_262p01600 0.63 +0.2 177,430 - PGA1_262p01600 0.71 +1.8 177,461 - PGA1_262p01600 0.75 +0.4 177,527 - PGA1_262p01600 0.85 +0.2 177,667 + -1.4 177,681 + +0.2 177,747 + +0.8 177,805 + PGA1_262p01610 0.14 +0.5 177,810 + PGA1_262p01610 0.14 -2.8 177,810 + PGA1_262p01610 0.14 -0.1 177,818 - PGA1_262p01610 0.15 +0.2 177,826 + PGA1_262p01610 0.16 +0.6 177,834 - PGA1_262p01610 0.16 -0.6 177,834 - PGA1_262p01610 0.16 -0.4 177,869 + PGA1_262p01610 0.19 -0.5 178,136 - PGA1_262p01610 0.41 -0.4 178,214 + PGA1_262p01610 0.47 -1.7 178,343 + PGA1_262p01610 0.57 -1.6 178,606 + PGA1_262p01610 0.78 -0.8 178,664 - PGA1_262p01610 0.83 -2.8 178,715 + PGA1_262p01610 0.87 -0.3 178,755 + +2.2 178,755 + +0.2 178,758 - -1.2 178,763 - -3.0 178,881 + -0.6 178,894 - +0.5 178,947 - -1.0 179,050 - PGA1_262p01620 0.29 -1.8 179,253 + PGA1_262p01620 0.69 -0.2 179,310 + PGA1_262p01620 0.80 +0.2 179,310 + PGA1_262p01620 0.80 +1.1 179,310 + PGA1_262p01620 0.80 -2.6 179,461 + +1.2 179,469 - +0.8 179,509 + PGA1_262p01630 0.13 -0.8 179,570 + PGA1_262p01630 0.38 -1.8 179,574 - PGA1_262p01630 0.40 +0.2 179,651 + PGA1_262p01630 0.71 -0.1 179,651 + PGA1_262p01630 0.71 +1.8 179,713 + -0.5 179,750 - -0.2 179,750 - -1.0 179,795 + -0.1 179,796 + +0.2 179,798 - -1.0 179,806 + -2.1 179,836 + -1.4 179,836 - +0.5 179,844 - -0.3
Or see this region's nucleotide sequence