Strain Fitness in Marinobacter adhaerens HP15 around HP15_3470

Experiment: m.b. nitrite 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3469 and HP15_3470 overlap by 1 nucleotidesHP15_3470 and HP15_3471 overlap by 4 nucleotides HP15_3469: HP15_3469 - protein containing DUF876, bacterial, at 3,656,883 to 3,658,217 _3469 HP15_3470: HP15_3470 - lipoprotein, at 3,658,217 to 3,658,750 _3470 HP15_3471: HP15_3471 - type VI secretion system, FHA domain-containing protein, at 3,658,747 to 3,660,045 _3471 Position (kb) 3658 3659Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3657.297 kb on - strand, within HP15_3469at 3657.328 kb on - strand, within HP15_3469at 3657.386 kb on - strand, within HP15_3469at 3657.414 kb on - strand, within HP15_3469at 3657.432 kb on - strand, within HP15_3469at 3657.434 kb on + strand, within HP15_3469at 3657.435 kb on + strand, within HP15_3469at 3657.475 kb on + strand, within HP15_3469at 3657.483 kb on - strand, within HP15_3469at 3657.483 kb on - strand, within HP15_3469at 3657.495 kb on - strand, within HP15_3469at 3657.655 kb on - strand, within HP15_3469at 3657.735 kb on + strand, within HP15_3469at 3657.782 kb on + strand, within HP15_3469at 3657.854 kb on - strand, within HP15_3469at 3657.898 kb on - strand, within HP15_3469at 3657.898 kb on - strand, within HP15_3469at 3658.006 kb on + strand, within HP15_3469at 3658.014 kb on - strand, within HP15_3469at 3658.016 kb on + strand, within HP15_3469at 3658.029 kb on + strand, within HP15_3469at 3658.032 kb on - strand, within HP15_3469at 3658.037 kb on - strand, within HP15_3469at 3658.179 kb on + strandat 3658.327 kb on + strand, within HP15_3470at 3658.327 kb on + strand, within HP15_3470at 3658.327 kb on + strand, within HP15_3470at 3658.408 kb on + strand, within HP15_3470at 3658.595 kb on + strand, within HP15_3470at 3658.595 kb on + strand, within HP15_3470at 3658.595 kb on + strand, within HP15_3470at 3658.603 kb on - strand, within HP15_3470at 3658.608 kb on - strand, within HP15_3470at 3658.688 kb on - strand, within HP15_3470at 3658.866 kb on + strandat 3658.877 kb on + strand, within HP15_3471at 3658.898 kb on + strand, within HP15_3471at 3658.928 kb on + strand, within HP15_3471at 3659.295 kb on - strand, within HP15_3471at 3659.298 kb on + strand, within HP15_3471at 3659.332 kb on - strand, within HP15_3471at 3659.413 kb on - strand, within HP15_3471at 3659.457 kb on - strand, within HP15_3471at 3659.542 kb on + strand, within HP15_3471at 3659.542 kb on + strand, within HP15_3471at 3659.550 kb on + strand, within HP15_3471at 3659.560 kb on - strand, within HP15_3471at 3659.637 kb on + strand, within HP15_3471at 3659.691 kb on - strand, within HP15_3471at 3659.710 kb on - strand, within HP15_3471at 3659.720 kb on + strand, within HP15_3471

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 10 mM
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3,657,297 - HP15_3469 0.31 -0.5
3,657,328 - HP15_3469 0.33 -1.8
3,657,386 - HP15_3469 0.38 +0.3
3,657,414 - HP15_3469 0.40 -0.1
3,657,432 - HP15_3469 0.41 -0.5
3,657,434 + HP15_3469 0.41 +0.3
3,657,435 + HP15_3469 0.41 +0.4
3,657,475 + HP15_3469 0.44 -2.9
3,657,483 - HP15_3469 0.45 +0.3
3,657,483 - HP15_3469 0.45 +0.6
3,657,495 - HP15_3469 0.46 +0.8
3,657,655 - HP15_3469 0.58 -0.0
3,657,735 + HP15_3469 0.64 +0.4
3,657,782 + HP15_3469 0.67 +0.6
3,657,854 - HP15_3469 0.73 -0.5
3,657,898 - HP15_3469 0.76 +0.0
3,657,898 - HP15_3469 0.76 -0.4
3,658,006 + HP15_3469 0.84 +0.4
3,658,014 - HP15_3469 0.85 -0.2
3,658,016 + HP15_3469 0.85 -0.5
3,658,029 + HP15_3469 0.86 +0.1
3,658,032 - HP15_3469 0.86 +0.6
3,658,037 - HP15_3469 0.86 -0.3
3,658,179 + -0.2
3,658,327 + HP15_3470 0.21 -0.3
3,658,327 + HP15_3470 0.21 +0.0
3,658,327 + HP15_3470 0.21 +0.9
3,658,408 + HP15_3470 0.36 +0.3
3,658,595 + HP15_3470 0.71 -0.2
3,658,595 + HP15_3470 0.71 +0.5
3,658,595 + HP15_3470 0.71 +1.8
3,658,603 - HP15_3470 0.72 +0.2
3,658,608 - HP15_3470 0.73 +0.4
3,658,688 - HP15_3470 0.88 +0.4
3,658,866 + -0.9
3,658,877 + HP15_3471 0.10 +0.3
3,658,898 + HP15_3471 0.12 -0.2
3,658,928 + HP15_3471 0.14 -0.7
3,659,295 - HP15_3471 0.42 +0.1
3,659,298 + HP15_3471 0.42 +0.2
3,659,332 - HP15_3471 0.45 +0.2
3,659,413 - HP15_3471 0.51 -0.5
3,659,457 - HP15_3471 0.55 +0.1
3,659,542 + HP15_3471 0.61 -0.0
3,659,542 + HP15_3471 0.61 -0.7
3,659,550 + HP15_3471 0.62 +1.7
3,659,560 - HP15_3471 0.63 +0.1
3,659,637 + HP15_3471 0.69 +1.0
3,659,691 - HP15_3471 0.73 +1.1
3,659,710 - HP15_3471 0.74 -0.2
3,659,720 + HP15_3471 0.75 -1.3

Or see this region's nucleotide sequence