Experiment: m.b. nitrite 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_277 and HP15_278 are separated by 72 nucleotides HP15_278 and HP15_279 are separated by 17 nucleotides HP15_279 and HP15_280 are separated by 17 nucleotides
HP15_277: HP15_277 - Mg-chelatase subunits D/I family, ComM subfamily protein, at 268,375 to 269,949
_277
HP15_278: HP15_278 - tRNA (guanine-N(7)-)-methyltransferase, at 270,022 to 270,753
_278
HP15_279: HP15_279 - conserved hypothetical protein, membrane, at 270,771 to 271,286
_279
HP15_280: HP15_280 - putative oxygen-independent coproporphyrinogen III oxidase, at 271,304 to 272,386
_280
Position (kb) 270
271
272 Strain fitness (log2 ratio) -1
0
1 at 269.786 kb on + strand, within HP15_277 at 269.938 kb on - strand at 269.970 kb on - strand at 270.091 kb on + strand at 270.098 kb on + strand, within HP15_278 at 270.264 kb on - strand, within HP15_278 at 270.324 kb on + strand, within HP15_278 at 270.342 kb on + strand, within HP15_278 at 270.397 kb on - strand, within HP15_278 at 270.458 kb on + strand, within HP15_278 at 270.520 kb on - strand, within HP15_278 at 270.536 kb on + strand, within HP15_278 at 270.537 kb on + strand, within HP15_278 at 270.770 kb on - strand at 270.775 kb on - strand at 270.855 kb on - strand, within HP15_279 at 270.866 kb on + strand, within HP15_279 at 270.876 kb on - strand, within HP15_279 at 270.878 kb on + strand, within HP15_279 at 270.926 kb on + strand, within HP15_279 at 270.934 kb on + strand, within HP15_279 at 270.965 kb on + strand, within HP15_279 at 271.150 kb on + strand, within HP15_279 at 271.184 kb on - strand, within HP15_279 at 271.184 kb on - strand, within HP15_279 at 271.221 kb on - strand, within HP15_279 at 271.435 kb on - strand, within HP15_280 at 271.536 kb on - strand, within HP15_280 at 271.536 kb on - strand, within HP15_280 at 271.830 kb on + strand, within HP15_280 at 271.880 kb on + strand, within HP15_280 at 271.880 kb on + strand, within HP15_280 at 271.880 kb on + strand, within HP15_280 at 271.880 kb on + strand, within HP15_280 at 271.880 kb on - strand, within HP15_280 at 271.880 kb on - strand, within HP15_280 at 271.898 kb on - strand, within HP15_280 at 272.062 kb on - strand, within HP15_280 at 272.168 kb on + strand, within HP15_280 at 272.233 kb on - strand, within HP15_280
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 10 mM remove 269,786 + HP15_277 0.90 -1.3 269,938 - +0.1 269,970 - -0.5 270,091 + -0.1 270,098 + HP15_278 0.10 -0.0 270,264 - HP15_278 0.33 -0.1 270,324 + HP15_278 0.41 +0.7 270,342 + HP15_278 0.44 -0.7 270,397 - HP15_278 0.51 +0.0 270,458 + HP15_278 0.60 -0.3 270,520 - HP15_278 0.68 -0.1 270,536 + HP15_278 0.70 +0.5 270,537 + HP15_278 0.70 -0.0 270,770 - +0.2 270,775 - +0.4 270,855 - HP15_279 0.16 +0.3 270,866 + HP15_279 0.18 -0.2 270,876 - HP15_279 0.20 +0.1 270,878 + HP15_279 0.21 +0.6 270,926 + HP15_279 0.30 +0.4 270,934 + HP15_279 0.32 -0.9 270,965 + HP15_279 0.38 +0.2 271,150 + HP15_279 0.73 +1.0 271,184 - HP15_279 0.80 +1.3 271,184 - HP15_279 0.80 +0.3 271,221 - HP15_279 0.87 +0.9 271,435 - HP15_280 0.12 -0.1 271,536 - HP15_280 0.21 +0.7 271,536 - HP15_280 0.21 -0.1 271,830 + HP15_280 0.49 +0.1 271,880 + HP15_280 0.53 -0.3 271,880 + HP15_280 0.53 -0.3 271,880 + HP15_280 0.53 +0.8 271,880 + HP15_280 0.53 -0.6 271,880 - HP15_280 0.53 -0.3 271,880 - HP15_280 0.53 +0.6 271,898 - HP15_280 0.55 -0.9 272,062 - HP15_280 0.70 -0.2 272,168 + HP15_280 0.80 -0.2 272,233 - HP15_280 0.86 -0.4
Or see this region's nucleotide sequence