Experiment: m.b. Chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c27750 and PGA1_c27760 overlap by 4 nucleotides PGA1_c27760 and PGA1_c27770 overlap by 4 nucleotides PGA1_c27770 and PGA1_c27790 are separated by 347 nucleotides
PGA1_c27750: PGA1_c27750 - ABC-type tungstate transport system, permease component, at 2,891,914 to 2,892,717
_c27750
PGA1_c27760: PGA1_c27760 - ABC transporter ATP-binding protein, at 2,892,714 to 2,893,439
_c27760
PGA1_c27770: PGA1_c27770 - putative ABC transporter inner membrane component, at 2,893,436 to 2,894,140
_c27770
PGA1_c27790: PGA1_c27790 - quinolinate synthetase A, at 2,894,488 to 2,895,540
_c27790
Position (kb)
2893
2894
2895 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2892.549 kb on + strand, within PGA1_c27750 at 2892.612 kb on + strand, within PGA1_c27750 at 2892.637 kb on - strand at 2892.644 kb on + strand at 2892.661 kb on - strand at 2892.689 kb on + strand at 2892.702 kb on + strand at 2892.702 kb on + strand at 2892.710 kb on - strand at 2892.747 kb on + strand at 2892.757 kb on + strand at 2892.765 kb on - strand at 2892.765 kb on - strand at 2892.835 kb on + strand, within PGA1_c27760 at 2892.873 kb on + strand, within PGA1_c27760 at 2892.954 kb on + strand, within PGA1_c27760 at 2893.027 kb on + strand, within PGA1_c27760 at 2893.077 kb on - strand, within PGA1_c27760 at 2893.079 kb on + strand, within PGA1_c27760 at 2893.084 kb on + strand, within PGA1_c27760 at 2893.084 kb on + strand, within PGA1_c27760 at 2893.092 kb on - strand, within PGA1_c27760 at 2893.096 kb on + strand, within PGA1_c27760 at 2893.097 kb on - strand, within PGA1_c27760 at 2893.104 kb on - strand, within PGA1_c27760 at 2893.141 kb on + strand, within PGA1_c27760 at 2893.194 kb on + strand, within PGA1_c27760 at 2893.201 kb on + strand, within PGA1_c27760 at 2893.233 kb on + strand, within PGA1_c27760 at 2893.262 kb on + strand, within PGA1_c27760 at 2893.331 kb on + strand, within PGA1_c27760 at 2893.391 kb on + strand at 2893.407 kb on - strand at 2893.423 kb on + strand at 2893.423 kb on + strand at 2893.510 kb on + strand, within PGA1_c27770 at 2893.510 kb on + strand, within PGA1_c27770 at 2893.517 kb on + strand, within PGA1_c27770 at 2893.518 kb on - strand, within PGA1_c27770 at 2893.518 kb on - strand, within PGA1_c27770 at 2893.575 kb on + strand, within PGA1_c27770 at 2893.583 kb on - strand, within PGA1_c27770 at 2893.654 kb on - strand, within PGA1_c27770 at 2893.689 kb on + strand, within PGA1_c27770 at 2893.689 kb on + strand, within PGA1_c27770 at 2893.689 kb on + strand, within PGA1_c27770 at 2893.689 kb on + strand, within PGA1_c27770 at 2893.697 kb on - strand, within PGA1_c27770 at 2893.697 kb on - strand, within PGA1_c27770 at 2893.697 kb on - strand, within PGA1_c27770 at 2893.701 kb on + strand, within PGA1_c27770 at 2893.701 kb on + strand, within PGA1_c27770 at 2893.709 kb on - strand, within PGA1_c27770 at 2893.820 kb on - strand, within PGA1_c27770 at 2893.901 kb on - strand, within PGA1_c27770 at 2893.931 kb on + strand, within PGA1_c27770 at 2893.938 kb on + strand, within PGA1_c27770 at 2893.939 kb on - strand, within PGA1_c27770 at 2893.946 kb on - strand, within PGA1_c27770 at 2893.946 kb on - strand, within PGA1_c27770 at 2893.998 kb on + strand, within PGA1_c27770 at 2894.006 kb on - strand, within PGA1_c27770 at 2894.085 kb on - strand at 2894.103 kb on - strand at 2894.113 kb on + strand at 2894.113 kb on + strand at 2894.122 kb on - strand at 2894.170 kb on + strand at 2894.183 kb on + strand at 2894.189 kb on - strand at 2894.212 kb on - strand at 2894.275 kb on - strand at 2894.305 kb on + strand at 2894.313 kb on - strand at 2894.320 kb on - strand at 2894.372 kb on - strand at 2894.392 kb on - strand at 2894.400 kb on + strand at 2894.462 kb on + strand at 2894.463 kb on - strand at 2894.470 kb on - strand at 2894.470 kb on - strand at 2894.472 kb on + strand at 2894.472 kb on + strand at 2894.472 kb on + strand at 2894.472 kb on + strand at 2894.480 kb on - strand at 2894.480 kb on - strand at 2894.480 kb on - strand at 2894.505 kb on - strand at 2894.554 kb on - strand at 2894.620 kb on + strand, within PGA1_c27790 at 2894.629 kb on - strand, within PGA1_c27790 at 2894.664 kb on + strand, within PGA1_c27790 at 2894.717 kb on + strand, within PGA1_c27790 at 2894.749 kb on - strand, within PGA1_c27790 at 2894.753 kb on + strand, within PGA1_c27790 at 2894.770 kb on + strand, within PGA1_c27790 at 2894.777 kb on - strand, within PGA1_c27790 at 2894.796 kb on - strand, within PGA1_c27790 at 2894.843 kb on + strand, within PGA1_c27790 at 2894.843 kb on + strand, within PGA1_c27790 at 2894.843 kb on + strand, within PGA1_c27790 at 2894.911 kb on + strand, within PGA1_c27790 at 2894.944 kb on + strand, within PGA1_c27790 at 2894.952 kb on - strand, within PGA1_c27790 at 2894.963 kb on + strand, within PGA1_c27790 at 2894.963 kb on + strand, within PGA1_c27790 at 2894.969 kb on - strand, within PGA1_c27790 at 2894.973 kb on + strand, within PGA1_c27790 at 2894.973 kb on + strand, within PGA1_c27790 at 2894.981 kb on - strand, within PGA1_c27790 at 2895.009 kb on - strand, within PGA1_c27790 at 2895.076 kb on + strand, within PGA1_c27790 at 2895.081 kb on + strand, within PGA1_c27790 at 2895.089 kb on + strand, within PGA1_c27790 at 2895.089 kb on - strand, within PGA1_c27790 at 2895.127 kb on + strand, within PGA1_c27790 at 2895.127 kb on - strand, within PGA1_c27790 at 2895.131 kb on + strand, within PGA1_c27790
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 0.16 mM remove 2,892,549 + PGA1_c27750 0.79 -0.3 2,892,612 + PGA1_c27750 0.87 +0.1 2,892,637 - +0.0 2,892,644 + +0.4 2,892,661 - -0.9 2,892,689 + +2.3 2,892,702 + +0.1 2,892,702 + -0.5 2,892,710 - -0.9 2,892,747 + -0.6 2,892,757 + +1.4 2,892,765 - +0.4 2,892,765 - +0.4 2,892,835 + PGA1_c27760 0.17 -0.3 2,892,873 + PGA1_c27760 0.22 +1.2 2,892,954 + PGA1_c27760 0.33 -0.4 2,893,027 + PGA1_c27760 0.43 +0.4 2,893,077 - PGA1_c27760 0.50 +1.1 2,893,079 + PGA1_c27760 0.50 -0.3 2,893,084 + PGA1_c27760 0.51 -0.3 2,893,084 + PGA1_c27760 0.51 -0.8 2,893,092 - PGA1_c27760 0.52 -0.3 2,893,096 + PGA1_c27760 0.53 -0.5 2,893,097 - PGA1_c27760 0.53 -0.4 2,893,104 - PGA1_c27760 0.54 -0.4 2,893,141 + PGA1_c27760 0.59 -0.6 2,893,194 + PGA1_c27760 0.66 +0.7 2,893,201 + PGA1_c27760 0.67 -0.3 2,893,233 + PGA1_c27760 0.71 +0.3 2,893,262 + PGA1_c27760 0.75 +0.4 2,893,331 + PGA1_c27760 0.85 +0.7 2,893,391 + -0.6 2,893,407 - +0.1 2,893,423 + -0.3 2,893,423 + +1.1 2,893,510 + PGA1_c27770 0.10 -0.8 2,893,510 + PGA1_c27770 0.10 -0.6 2,893,517 + PGA1_c27770 0.11 -2.3 2,893,518 - PGA1_c27770 0.12 -0.8 2,893,518 - PGA1_c27770 0.12 -0.5 2,893,575 + PGA1_c27770 0.20 -0.6 2,893,583 - PGA1_c27770 0.21 +0.5 2,893,654 - PGA1_c27770 0.31 +0.7 2,893,689 + PGA1_c27770 0.36 +0.7 2,893,689 + PGA1_c27770 0.36 +0.1 2,893,689 + PGA1_c27770 0.36 -0.1 2,893,689 + PGA1_c27770 0.36 -1.8 2,893,697 - PGA1_c27770 0.37 -0.3 2,893,697 - PGA1_c27770 0.37 -1.0 2,893,697 - PGA1_c27770 0.37 -1.2 2,893,701 + PGA1_c27770 0.38 +1.1 2,893,701 + PGA1_c27770 0.38 -0.4 2,893,709 - PGA1_c27770 0.39 -0.4 2,893,820 - PGA1_c27770 0.54 -0.0 2,893,901 - PGA1_c27770 0.66 +0.7 2,893,931 + PGA1_c27770 0.70 -0.3 2,893,938 + PGA1_c27770 0.71 -0.1 2,893,939 - PGA1_c27770 0.71 +0.8 2,893,946 - PGA1_c27770 0.72 -0.6 2,893,946 - PGA1_c27770 0.72 -0.4 2,893,998 + PGA1_c27770 0.80 +0.6 2,894,006 - PGA1_c27770 0.81 -2.4 2,894,085 - +2.5 2,894,103 - -0.3 2,894,113 + +0.1 2,894,113 + -0.6 2,894,122 - +0.1 2,894,170 + -0.8 2,894,183 + -1.9 2,894,189 - -0.5 2,894,212 - +1.6 2,894,275 - +0.1 2,894,305 + -1.0 2,894,313 - +1.2 2,894,320 - +0.2 2,894,372 - -0.3 2,894,392 - -0.1 2,894,400 + +0.1 2,894,462 + +0.4 2,894,463 - +0.2 2,894,470 - +0.4 2,894,470 - -2.5 2,894,472 + -0.0 2,894,472 + -0.3 2,894,472 + +0.9 2,894,472 + +0.1 2,894,480 - -1.1 2,894,480 - +0.1 2,894,480 - +1.0 2,894,505 - +0.2 2,894,554 - -1.3 2,894,620 + PGA1_c27790 0.13 -1.0 2,894,629 - PGA1_c27790 0.13 -0.1 2,894,664 + PGA1_c27790 0.17 -0.9 2,894,717 + PGA1_c27790 0.22 -0.1 2,894,749 - PGA1_c27790 0.25 +0.3 2,894,753 + PGA1_c27790 0.25 +0.6 2,894,770 + PGA1_c27790 0.27 +0.7 2,894,777 - PGA1_c27790 0.27 +1.1 2,894,796 - PGA1_c27790 0.29 -2.3 2,894,843 + PGA1_c27790 0.34 +0.9 2,894,843 + PGA1_c27790 0.34 -0.2 2,894,843 + PGA1_c27790 0.34 -0.1 2,894,911 + PGA1_c27790 0.40 -1.0 2,894,944 + PGA1_c27790 0.43 -0.6 2,894,952 - PGA1_c27790 0.44 -0.3 2,894,963 + PGA1_c27790 0.45 -0.8 2,894,963 + PGA1_c27790 0.45 -0.9 2,894,969 - PGA1_c27790 0.46 -0.9 2,894,973 + PGA1_c27790 0.46 -0.1 2,894,973 + PGA1_c27790 0.46 -0.4 2,894,981 - PGA1_c27790 0.47 +1.0 2,895,009 - PGA1_c27790 0.49 +0.3 2,895,076 + PGA1_c27790 0.56 +1.0 2,895,081 + PGA1_c27790 0.56 -0.1 2,895,089 + PGA1_c27790 0.57 +1.4 2,895,089 - PGA1_c27790 0.57 +2.5 2,895,127 + PGA1_c27790 0.61 -1.0 2,895,127 - PGA1_c27790 0.61 +1.3 2,895,131 + PGA1_c27790 0.61 +1.5
Or see this region's nucleotide sequence