Experiment: m.b. nitrite 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1955 and HP15_1956 are separated by 164 nucleotides HP15_1956 and HP15_1957 overlap by 4 nucleotides HP15_1957 and HP15_1958 are separated by 57 nucleotides HP15_1958 and HP15_1959 overlap by 1 nucleotides
HP15_1955: HP15_1955 - conserved hypothetical protein, secreted, at 2,075,391 to 2,075,807
_1955
HP15_1956: HP15_1956 - hypothetical protein, at 2,075,972 to 2,076,478
_1956
HP15_1957: HP15_1957 - hypothetical protein, at 2,076,475 to 2,077,446
_1957
HP15_1958: HP15_1958 - hypothetical protein, at 2,077,504 to 2,077,914
_1958
HP15_1959: HP15_1959 - conserved hypothetical protein, at 2,077,914 to 2,078,531
_1959
Position (kb)
2076
2077
2078 Strain fitness (log2 ratio)
-1
0
1
2 at 2075.538 kb on + strand, within HP15_1955 at 2075.587 kb on + strand, within HP15_1955 at 2075.617 kb on - strand, within HP15_1955 at 2075.656 kb on - strand, within HP15_1955 at 2075.696 kb on - strand, within HP15_1955 at 2075.905 kb on + strand at 2075.913 kb on - strand at 2075.970 kb on + strand at 2075.970 kb on + strand at 2075.977 kb on - strand at 2075.988 kb on + strand at 2076.035 kb on - strand, within HP15_1956 at 2076.035 kb on - strand, within HP15_1956 at 2076.035 kb on - strand, within HP15_1956 at 2076.035 kb on - strand, within HP15_1956 at 2076.035 kb on - strand, within HP15_1956 at 2076.067 kb on + strand, within HP15_1956 at 2076.075 kb on - strand, within HP15_1956 at 2076.108 kb on + strand, within HP15_1956 at 2076.116 kb on - strand, within HP15_1956 at 2076.318 kb on + strand, within HP15_1956 at 2076.380 kb on - strand, within HP15_1956 at 2076.570 kb on - strand at 2076.576 kb on + strand, within HP15_1957 at 2076.576 kb on + strand, within HP15_1957 at 2076.576 kb on + strand, within HP15_1957 at 2076.576 kb on + strand, within HP15_1957 at 2076.683 kb on - strand, within HP15_1957 at 2076.693 kb on - strand, within HP15_1957 at 2076.697 kb on + strand, within HP15_1957 at 2076.702 kb on + strand, within HP15_1957 at 2076.731 kb on + strand, within HP15_1957 at 2076.739 kb on - strand, within HP15_1957 at 2076.744 kb on - strand, within HP15_1957 at 2076.744 kb on - strand, within HP15_1957 at 2076.773 kb on - strand, within HP15_1957 at 2076.815 kb on - strand, within HP15_1957 at 2076.927 kb on - strand, within HP15_1957 at 2077.014 kb on - strand, within HP15_1957 at 2077.059 kb on - strand, within HP15_1957 at 2077.149 kb on - strand, within HP15_1957 at 2077.186 kb on - strand, within HP15_1957 at 2077.338 kb on - strand, within HP15_1957 at 2077.350 kb on + strand at 2077.442 kb on + strand at 2077.491 kb on - strand at 2077.493 kb on + strand at 2077.522 kb on - strand at 2077.523 kb on - strand at 2077.542 kb on + strand at 2077.550 kb on - strand, within HP15_1958 at 2077.581 kb on + strand, within HP15_1958 at 2077.581 kb on + strand, within HP15_1958 at 2077.581 kb on + strand, within HP15_1958 at 2077.589 kb on - strand, within HP15_1958 at 2077.594 kb on - strand, within HP15_1958 at 2077.639 kb on + strand, within HP15_1958 at 2077.639 kb on + strand, within HP15_1958 at 2077.646 kb on + strand, within HP15_1958 at 2077.647 kb on - strand, within HP15_1958 at 2077.658 kb on + strand, within HP15_1958 at 2077.688 kb on - strand, within HP15_1958 at 2077.734 kb on + strand, within HP15_1958 at 2077.742 kb on - strand, within HP15_1958 at 2077.837 kb on + strand, within HP15_1958 at 2077.875 kb on - strand at 2077.896 kb on + strand at 2078.067 kb on - strand, within HP15_1959 at 2078.127 kb on - strand, within HP15_1959 at 2078.127 kb on - strand, within HP15_1959 at 2078.154 kb on + strand, within HP15_1959 at 2078.285 kb on + strand, within HP15_1959 at 2078.340 kb on - strand, within HP15_1959 at 2078.355 kb on + strand, within HP15_1959 at 2078.360 kb on - strand, within HP15_1959 at 2078.363 kb on - strand, within HP15_1959 at 2078.378 kb on - strand, within HP15_1959 at 2078.410 kb on + strand, within HP15_1959
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 10 mM remove 2,075,538 + HP15_1955 0.35 +1.0 2,075,587 + HP15_1955 0.47 -0.3 2,075,617 - HP15_1955 0.54 -0.0 2,075,656 - HP15_1955 0.64 -0.0 2,075,696 - HP15_1955 0.73 -0.3 2,075,905 + +0.7 2,075,913 - +0.1 2,075,970 + -0.3 2,075,970 + +1.4 2,075,977 - +1.1 2,075,988 + -0.2 2,076,035 - HP15_1956 0.12 -0.4 2,076,035 - HP15_1956 0.12 -0.5 2,076,035 - HP15_1956 0.12 +0.3 2,076,035 - HP15_1956 0.12 +0.2 2,076,035 - HP15_1956 0.12 +2.0 2,076,067 + HP15_1956 0.19 +0.6 2,076,075 - HP15_1956 0.20 +0.6 2,076,108 + HP15_1956 0.27 +1.5 2,076,116 - HP15_1956 0.28 -0.2 2,076,318 + HP15_1956 0.68 +0.5 2,076,380 - HP15_1956 0.80 -0.1 2,076,570 - +0.4 2,076,576 + HP15_1957 0.10 +1.2 2,076,576 + HP15_1957 0.10 +0.3 2,076,576 + HP15_1957 0.10 -1.4 2,076,576 + HP15_1957 0.10 +0.5 2,076,683 - HP15_1957 0.21 +1.1 2,076,693 - HP15_1957 0.22 +1.0 2,076,697 + HP15_1957 0.23 +0.0 2,076,702 + HP15_1957 0.23 +1.0 2,076,731 + HP15_1957 0.26 -1.4 2,076,739 - HP15_1957 0.27 +0.5 2,076,744 - HP15_1957 0.28 +0.9 2,076,744 - HP15_1957 0.28 -0.3 2,076,773 - HP15_1957 0.31 +0.1 2,076,815 - HP15_1957 0.35 +0.8 2,076,927 - HP15_1957 0.47 -0.1 2,077,014 - HP15_1957 0.55 +0.3 2,077,059 - HP15_1957 0.60 +0.4 2,077,149 - HP15_1957 0.69 +0.6 2,077,186 - HP15_1957 0.73 -0.3 2,077,338 - HP15_1957 0.89 +1.4 2,077,350 + +0.6 2,077,442 + +0.7 2,077,491 - +0.4 2,077,493 + +0.4 2,077,522 - -1.0 2,077,523 - +1.0 2,077,542 + +0.6 2,077,550 - HP15_1958 0.11 -0.0 2,077,581 + HP15_1958 0.19 +1.8 2,077,581 + HP15_1958 0.19 -0.2 2,077,581 + HP15_1958 0.19 +0.5 2,077,589 - HP15_1958 0.21 -0.1 2,077,594 - HP15_1958 0.22 -0.2 2,077,639 + HP15_1958 0.33 +0.9 2,077,639 + HP15_1958 0.33 +0.3 2,077,646 + HP15_1958 0.35 +0.8 2,077,647 - HP15_1958 0.35 -0.6 2,077,658 + HP15_1958 0.37 -0.3 2,077,688 - HP15_1958 0.45 +0.8 2,077,734 + HP15_1958 0.56 +0.2 2,077,742 - HP15_1958 0.58 +0.7 2,077,837 + HP15_1958 0.81 +1.1 2,077,875 - +0.4 2,077,896 + +1.1 2,078,067 - HP15_1959 0.25 -0.4 2,078,127 - HP15_1959 0.34 +0.6 2,078,127 - HP15_1959 0.34 +0.2 2,078,154 + HP15_1959 0.39 +0.3 2,078,285 + HP15_1959 0.60 +0.1 2,078,340 - HP15_1959 0.69 +0.2 2,078,355 + HP15_1959 0.71 +0.2 2,078,360 - HP15_1959 0.72 +0.5 2,078,363 - HP15_1959 0.73 +1.0 2,078,378 - HP15_1959 0.75 +0.7 2,078,410 + HP15_1959 0.80 +0.0
Or see this region's nucleotide sequence