Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c16270

Experiment: m.b. Chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c16260 and PGA1_c16270 are separated by 85 nucleotidesPGA1_c16270 and PGA1_c16280 are separated by 1 nucleotides PGA1_c16260: PGA1_c16260 - putative membrane dipeptidase, at 1,687,844 to 1,688,914 _c16260 PGA1_c16270: PGA1_c16270 - putative periplasmic dipeptide transport protein, at 1,689,000 to 1,690,595 _c16270 PGA1_c16280: PGA1_c16280 - putative dipeptide transport system permease protein, at 1,690,597 to 1,691,655 _c16280 Position (kb) 1688 1689 1690 1691Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.058 kb on + strand, within PGA1_c16260at 1688.066 kb on - strand, within PGA1_c16260at 1688.066 kb on - strand, within PGA1_c16260at 1688.066 kb on - strand, within PGA1_c16260at 1688.066 kb on - strand, within PGA1_c16260at 1688.066 kb on - strand, within PGA1_c16260at 1688.066 kb on - strand, within PGA1_c16260at 1688.100 kb on - strand, within PGA1_c16260at 1688.234 kb on - strand, within PGA1_c16260at 1688.246 kb on - strand, within PGA1_c16260at 1688.276 kb on - strand, within PGA1_c16260at 1688.278 kb on + strand, within PGA1_c16260at 1688.291 kb on + strand, within PGA1_c16260at 1688.299 kb on - strand, within PGA1_c16260at 1688.299 kb on - strand, within PGA1_c16260at 1688.299 kb on - strand, within PGA1_c16260at 1688.309 kb on - strand, within PGA1_c16260at 1688.309 kb on - strand, within PGA1_c16260at 1688.309 kb on - strand, within PGA1_c16260at 1688.312 kb on + strand, within PGA1_c16260at 1688.312 kb on + strand, within PGA1_c16260at 1688.320 kb on - strand, within PGA1_c16260at 1688.320 kb on - strand, within PGA1_c16260at 1688.320 kb on - strand, within PGA1_c16260at 1688.320 kb on - strand, within PGA1_c16260at 1688.320 kb on - strand, within PGA1_c16260at 1688.331 kb on + strand, within PGA1_c16260at 1688.374 kb on - strand, within PGA1_c16260at 1688.488 kb on + strand, within PGA1_c16260at 1688.547 kb on + strand, within PGA1_c16260at 1688.603 kb on + strand, within PGA1_c16260at 1688.616 kb on - strand, within PGA1_c16260at 1688.677 kb on + strand, within PGA1_c16260at 1688.688 kb on + strand, within PGA1_c16260at 1688.756 kb on - strand, within PGA1_c16260at 1688.802 kb on + strand, within PGA1_c16260at 1688.810 kb on - strandat 1688.823 kb on + strandat 1688.883 kb on + strandat 1688.914 kb on - strandat 1688.932 kb on - strandat 1688.937 kb on - strandat 1688.949 kb on + strandat 1688.949 kb on + strandat 1688.949 kb on + strandat 1689.018 kb on + strandat 1689.052 kb on + strandat 1689.061 kb on - strandat 1689.168 kb on + strand, within PGA1_c16270at 1689.176 kb on - strand, within PGA1_c16270at 1689.202 kb on + strand, within PGA1_c16270at 1689.202 kb on + strand, within PGA1_c16270at 1689.202 kb on + strand, within PGA1_c16270at 1689.202 kb on + strand, within PGA1_c16270at 1689.202 kb on + strand, within PGA1_c16270at 1689.202 kb on + strand, within PGA1_c16270at 1689.202 kb on + strand, within PGA1_c16270at 1689.202 kb on + strand, within PGA1_c16270at 1689.202 kb on + strand, within PGA1_c16270at 1689.202 kb on + strand, within PGA1_c16270at 1689.205 kb on - strand, within PGA1_c16270at 1689.210 kb on - strand, within PGA1_c16270at 1689.210 kb on - strand, within PGA1_c16270at 1689.210 kb on - strand, within PGA1_c16270at 1689.210 kb on - strand, within PGA1_c16270at 1689.210 kb on - strand, within PGA1_c16270at 1689.210 kb on - strand, within PGA1_c16270at 1689.210 kb on - strand, within PGA1_c16270at 1689.210 kb on - strand, within PGA1_c16270at 1689.210 kb on - strand, within PGA1_c16270at 1689.210 kb on - strand, within PGA1_c16270at 1689.210 kb on - strand, within PGA1_c16270at 1689.210 kb on - strand, within PGA1_c16270at 1689.210 kb on - strand, within PGA1_c16270at 1689.211 kb on + strand, within PGA1_c16270at 1689.294 kb on - strand, within PGA1_c16270at 1689.311 kb on - strand, within PGA1_c16270at 1689.413 kb on - strand, within PGA1_c16270at 1689.415 kb on - strand, within PGA1_c16270at 1689.452 kb on + strand, within PGA1_c16270at 1689.460 kb on - strand, within PGA1_c16270at 1689.501 kb on + strand, within PGA1_c16270at 1689.501 kb on + strand, within PGA1_c16270at 1689.501 kb on + strand, within PGA1_c16270at 1689.501 kb on + strand, within PGA1_c16270at 1689.509 kb on - strand, within PGA1_c16270at 1689.509 kb on - strand, within PGA1_c16270at 1689.554 kb on - strand, within PGA1_c16270at 1689.612 kb on + strand, within PGA1_c16270at 1689.613 kb on + strand, within PGA1_c16270at 1689.655 kb on + strand, within PGA1_c16270at 1689.663 kb on - strand, within PGA1_c16270at 1689.787 kb on + strand, within PGA1_c16270at 1689.787 kb on + strand, within PGA1_c16270at 1689.829 kb on + strand, within PGA1_c16270at 1689.837 kb on - strand, within PGA1_c16270at 1689.858 kb on + strand, within PGA1_c16270at 1689.889 kb on + strand, within PGA1_c16270at 1689.897 kb on - strand, within PGA1_c16270at 1689.897 kb on - strand, within PGA1_c16270at 1689.899 kb on + strand, within PGA1_c16270at 1689.904 kb on + strand, within PGA1_c16270at 1689.906 kb on + strand, within PGA1_c16270at 1689.906 kb on + strand, within PGA1_c16270at 1689.906 kb on + strand, within PGA1_c16270at 1689.906 kb on + strand, within PGA1_c16270at 1689.906 kb on + strand, within PGA1_c16270at 1689.907 kb on - strand, within PGA1_c16270at 1689.907 kb on - strand, within PGA1_c16270at 1689.907 kb on - strand, within PGA1_c16270at 1689.907 kb on - strand, within PGA1_c16270at 1689.914 kb on - strand, within PGA1_c16270at 1689.926 kb on + strand, within PGA1_c16270at 1690.058 kb on + strand, within PGA1_c16270at 1690.066 kb on - strand, within PGA1_c16270at 1690.066 kb on - strand, within PGA1_c16270at 1690.130 kb on - strand, within PGA1_c16270at 1690.180 kb on - strand, within PGA1_c16270at 1690.180 kb on - strand, within PGA1_c16270at 1690.189 kb on + strand, within PGA1_c16270at 1690.189 kb on + strand, within PGA1_c16270at 1690.189 kb on + strand, within PGA1_c16270at 1690.189 kb on + strand, within PGA1_c16270at 1690.267 kb on + strand, within PGA1_c16270at 1690.274 kb on - strand, within PGA1_c16270at 1690.276 kb on + strand, within PGA1_c16270at 1690.276 kb on + strand, within PGA1_c16270at 1690.279 kb on - strand, within PGA1_c16270at 1690.284 kb on - strand, within PGA1_c16270at 1690.284 kb on - strand, within PGA1_c16270at 1690.299 kb on + strand, within PGA1_c16270at 1690.299 kb on + strand, within PGA1_c16270at 1690.358 kb on - strand, within PGA1_c16270at 1690.376 kb on - strand, within PGA1_c16270at 1690.495 kb on + strandat 1690.539 kb on + strandat 1690.539 kb on + strandat 1690.539 kb on + strandat 1690.547 kb on - strandat 1690.547 kb on - strandat 1690.654 kb on - strandat 1690.661 kb on + strandat 1690.789 kb on - strand, within PGA1_c16280at 1690.789 kb on - strand, within PGA1_c16280at 1690.791 kb on + strand, within PGA1_c16280at 1690.791 kb on + strand, within PGA1_c16280at 1690.791 kb on + strand, within PGA1_c16280at 1690.794 kb on - strand, within PGA1_c16280at 1690.799 kb on - strand, within PGA1_c16280at 1690.799 kb on - strand, within PGA1_c16280at 1690.799 kb on - strand, within PGA1_c16280at 1690.799 kb on - strand, within PGA1_c16280at 1690.816 kb on + strand, within PGA1_c16280at 1690.817 kb on + strand, within PGA1_c16280at 1690.835 kb on - strand, within PGA1_c16280at 1690.943 kb on + strand, within PGA1_c16280at 1690.951 kb on - strand, within PGA1_c16280at 1690.951 kb on - strand, within PGA1_c16280at 1690.976 kb on + strand, within PGA1_c16280at 1690.976 kb on + strand, within PGA1_c16280at 1690.976 kb on + strand, within PGA1_c16280at 1690.984 kb on - strand, within PGA1_c16280at 1691.140 kb on + strand, within PGA1_c16280at 1691.169 kb on + strand, within PGA1_c16280at 1691.258 kb on - strand, within PGA1_c16280at 1691.286 kb on + strand, within PGA1_c16280at 1691.289 kb on - strand, within PGA1_c16280at 1691.293 kb on - strand, within PGA1_c16280at 1691.294 kb on - strand, within PGA1_c16280at 1691.345 kb on - strand, within PGA1_c16280at 1691.373 kb on + strand, within PGA1_c16280at 1691.381 kb on - strand, within PGA1_c16280at 1691.389 kb on + strand, within PGA1_c16280at 1691.430 kb on + strand, within PGA1_c16280at 1691.438 kb on - strand, within PGA1_c16280at 1691.446 kb on + strand, within PGA1_c16280at 1691.474 kb on + strand, within PGA1_c16280at 1691.474 kb on + strand, within PGA1_c16280at 1691.474 kb on + strand, within PGA1_c16280at 1691.474 kb on - strand, within PGA1_c16280at 1691.479 kb on + strand, within PGA1_c16280at 1691.482 kb on - strand, within PGA1_c16280at 1691.531 kb on - strand, within PGA1_c16280at 1691.531 kb on - strand, within PGA1_c16280at 1691.553 kb on - strandat 1691.560 kb on + strandat 1691.568 kb on - strandat 1691.586 kb on - strandat 1691.590 kb on + strandat 1691.590 kb on + strandat 1691.590 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.16 mM
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1,688,058 + PGA1_c16260 0.20 +0.2
1,688,058 + PGA1_c16260 0.20 +0.4
1,688,058 + PGA1_c16260 0.20 -1.2
1,688,058 + PGA1_c16260 0.20 +0.8
1,688,058 + PGA1_c16260 0.20 -0.5
1,688,058 + PGA1_c16260 0.20 -1.9
1,688,058 + PGA1_c16260 0.20 +1.0
1,688,058 + PGA1_c16260 0.20 -0.1
1,688,058 + PGA1_c16260 0.20 -0.4
1,688,058 + PGA1_c16260 0.20 +0.3
1,688,058 + PGA1_c16260 0.20 -0.3
1,688,058 + PGA1_c16260 0.20 -0.3
1,688,058 + PGA1_c16260 0.20 -0.0
1,688,058 + PGA1_c16260 0.20 -2.5
1,688,058 + PGA1_c16260 0.20 +1.3
1,688,058 + PGA1_c16260 0.20 -0.1
1,688,058 + PGA1_c16260 0.20 -0.0
1,688,066 - PGA1_c16260 0.21 +1.1
1,688,066 - PGA1_c16260 0.21 +0.4
1,688,066 - PGA1_c16260 0.21 -0.0
1,688,066 - PGA1_c16260 0.21 -1.2
1,688,066 - PGA1_c16260 0.21 -0.2
1,688,066 - PGA1_c16260 0.21 +0.1
1,688,100 - PGA1_c16260 0.24 +0.8
1,688,234 - PGA1_c16260 0.36 -0.0
1,688,246 - PGA1_c16260 0.38 +2.2
1,688,276 - PGA1_c16260 0.40 +1.3
1,688,278 + PGA1_c16260 0.41 +0.0
1,688,291 + PGA1_c16260 0.42 +1.2
1,688,299 - PGA1_c16260 0.42 +1.2
1,688,299 - PGA1_c16260 0.42 +0.5
1,688,299 - PGA1_c16260 0.42 -0.6
1,688,309 - PGA1_c16260 0.43 +1.2
1,688,309 - PGA1_c16260 0.43 +0.6
1,688,309 - PGA1_c16260 0.43 -0.1
1,688,312 + PGA1_c16260 0.44 +0.1
1,688,312 + PGA1_c16260 0.44 -0.3
1,688,320 - PGA1_c16260 0.44 +0.4
1,688,320 - PGA1_c16260 0.44 -0.1
1,688,320 - PGA1_c16260 0.44 -0.0
1,688,320 - PGA1_c16260 0.44 +2.7
1,688,320 - PGA1_c16260 0.44 +1.0
1,688,331 + PGA1_c16260 0.45 -0.2
1,688,374 - PGA1_c16260 0.49 +0.0
1,688,488 + PGA1_c16260 0.60 +0.0
1,688,547 + PGA1_c16260 0.66 -0.9
1,688,603 + PGA1_c16260 0.71 -0.0
1,688,616 - PGA1_c16260 0.72 +1.1
1,688,677 + PGA1_c16260 0.78 -0.6
1,688,688 + PGA1_c16260 0.79 +0.7
1,688,756 - PGA1_c16260 0.85 -0.1
1,688,802 + PGA1_c16260 0.89 +0.3
1,688,810 - +0.7
1,688,823 + +1.0
1,688,883 + -0.3
1,688,914 - -1.8
1,688,932 - +0.2
1,688,937 - +0.6
1,688,949 + +1.3
1,688,949 + -0.3
1,688,949 + -1.1
1,689,018 + -0.2
1,689,052 + -0.5
1,689,061 - +0.6
1,689,168 + PGA1_c16270 0.11 +1.1
1,689,176 - PGA1_c16270 0.11 +1.5
1,689,202 + PGA1_c16270 0.13 +0.5
1,689,202 + PGA1_c16270 0.13 -0.4
1,689,202 + PGA1_c16270 0.13 +0.3
1,689,202 + PGA1_c16270 0.13 +1.7
1,689,202 + PGA1_c16270 0.13 +0.1
1,689,202 + PGA1_c16270 0.13 +0.3
1,689,202 + PGA1_c16270 0.13 -0.3
1,689,202 + PGA1_c16270 0.13 -0.3
1,689,202 + PGA1_c16270 0.13 -0.1
1,689,202 + PGA1_c16270 0.13 -0.8
1,689,205 - PGA1_c16270 0.13 -1.0
1,689,210 - PGA1_c16270 0.13 +1.7
1,689,210 - PGA1_c16270 0.13 +0.7
1,689,210 - PGA1_c16270 0.13 -0.7
1,689,210 - PGA1_c16270 0.13 +0.0
1,689,210 - PGA1_c16270 0.13 +0.2
1,689,210 - PGA1_c16270 0.13 +0.3
1,689,210 - PGA1_c16270 0.13 +1.2
1,689,210 - PGA1_c16270 0.13 +0.3
1,689,210 - PGA1_c16270 0.13 -1.1
1,689,210 - PGA1_c16270 0.13 -0.9
1,689,210 - PGA1_c16270 0.13 +1.2
1,689,210 - PGA1_c16270 0.13 -0.0
1,689,210 - PGA1_c16270 0.13 +0.2
1,689,211 + PGA1_c16270 0.13 -0.8
1,689,294 - PGA1_c16270 0.18 -2.3
1,689,311 - PGA1_c16270 0.19 -0.8
1,689,413 - PGA1_c16270 0.26 +0.2
1,689,415 - PGA1_c16270 0.26 -0.0
1,689,452 + PGA1_c16270 0.28 +0.5
1,689,460 - PGA1_c16270 0.29 -0.3
1,689,501 + PGA1_c16270 0.31 -0.1
1,689,501 + PGA1_c16270 0.31 +1.1
1,689,501 + PGA1_c16270 0.31 +0.5
1,689,501 + PGA1_c16270 0.31 +0.3
1,689,509 - PGA1_c16270 0.32 -0.2
1,689,509 - PGA1_c16270 0.32 +0.9
1,689,554 - PGA1_c16270 0.35 +0.7
1,689,612 + PGA1_c16270 0.38 +0.7
1,689,613 + PGA1_c16270 0.38 +0.7
1,689,655 + PGA1_c16270 0.41 +0.3
1,689,663 - PGA1_c16270 0.42 -0.2
1,689,787 + PGA1_c16270 0.49 +0.7
1,689,787 + PGA1_c16270 0.49 -0.7
1,689,829 + PGA1_c16270 0.52 -0.7
1,689,837 - PGA1_c16270 0.52 -1.4
1,689,858 + PGA1_c16270 0.54 -0.8
1,689,889 + PGA1_c16270 0.56 +0.9
1,689,897 - PGA1_c16270 0.56 +0.0
1,689,897 - PGA1_c16270 0.56 +1.5
1,689,899 + PGA1_c16270 0.56 +0.1
1,689,904 + PGA1_c16270 0.57 -0.8
1,689,906 + PGA1_c16270 0.57 -1.3
1,689,906 + PGA1_c16270 0.57 +0.2
1,689,906 + PGA1_c16270 0.57 +0.2
1,689,906 + PGA1_c16270 0.57 +1.1
1,689,906 + PGA1_c16270 0.57 +1.4
1,689,907 - PGA1_c16270 0.57 +0.5
1,689,907 - PGA1_c16270 0.57 -0.5
1,689,907 - PGA1_c16270 0.57 +0.2
1,689,907 - PGA1_c16270 0.57 +0.2
1,689,914 - PGA1_c16270 0.57 -0.0
1,689,926 + PGA1_c16270 0.58 +0.5
1,690,058 + PGA1_c16270 0.66 -0.4
1,690,066 - PGA1_c16270 0.67 +0.6
1,690,066 - PGA1_c16270 0.67 +1.9
1,690,130 - PGA1_c16270 0.71 +1.0
1,690,180 - PGA1_c16270 0.74 -0.0
1,690,180 - PGA1_c16270 0.74 +0.6
1,690,189 + PGA1_c16270 0.74 -0.2
1,690,189 + PGA1_c16270 0.74 -0.6
1,690,189 + PGA1_c16270 0.74 +0.1
1,690,189 + PGA1_c16270 0.74 +0.9
1,690,267 + PGA1_c16270 0.79 +0.0
1,690,274 - PGA1_c16270 0.80 +0.2
1,690,276 + PGA1_c16270 0.80 +0.2
1,690,276 + PGA1_c16270 0.80 -0.1
1,690,279 - PGA1_c16270 0.80 +1.9
1,690,284 - PGA1_c16270 0.80 +0.0
1,690,284 - PGA1_c16270 0.80 -1.0
1,690,299 + PGA1_c16270 0.81 +0.7
1,690,299 + PGA1_c16270 0.81 -0.4
1,690,358 - PGA1_c16270 0.85 -0.1
1,690,376 - PGA1_c16270 0.86 -1.5
1,690,495 + +0.3
1,690,539 + -0.0
1,690,539 + -0.2
1,690,539 + -0.8
1,690,547 - -0.8
1,690,547 - -0.9
1,690,654 - +1.1
1,690,661 + +0.0
1,690,789 - PGA1_c16280 0.18 +1.4
1,690,789 - PGA1_c16280 0.18 -0.7
1,690,791 + PGA1_c16280 0.18 -0.4
1,690,791 + PGA1_c16280 0.18 +0.1
1,690,791 + PGA1_c16280 0.18 +0.7
1,690,794 - PGA1_c16280 0.19 -0.2
1,690,799 - PGA1_c16280 0.19 -0.8
1,690,799 - PGA1_c16280 0.19 -1.7
1,690,799 - PGA1_c16280 0.19 +2.5
1,690,799 - PGA1_c16280 0.19 +0.5
1,690,816 + PGA1_c16280 0.21 +0.2
1,690,817 + PGA1_c16280 0.21 -0.2
1,690,835 - PGA1_c16280 0.22 +0.9
1,690,943 + PGA1_c16280 0.33 +0.1
1,690,951 - PGA1_c16280 0.33 +0.0
1,690,951 - PGA1_c16280 0.33 -0.5
1,690,976 + PGA1_c16280 0.36 +0.5
1,690,976 + PGA1_c16280 0.36 +2.2
1,690,976 + PGA1_c16280 0.36 -1.3
1,690,984 - PGA1_c16280 0.37 +1.0
1,691,140 + PGA1_c16280 0.51 +0.1
1,691,169 + PGA1_c16280 0.54 -0.9
1,691,258 - PGA1_c16280 0.62 -0.3
1,691,286 + PGA1_c16280 0.65 +0.2
1,691,289 - PGA1_c16280 0.65 +0.2
1,691,293 - PGA1_c16280 0.66 -0.2
1,691,294 - PGA1_c16280 0.66 -0.1
1,691,345 - PGA1_c16280 0.71 +3.1
1,691,373 + PGA1_c16280 0.73 -1.1
1,691,381 - PGA1_c16280 0.74 -0.2
1,691,389 + PGA1_c16280 0.75 +0.2
1,691,430 + PGA1_c16280 0.79 +0.5
1,691,438 - PGA1_c16280 0.79 +0.1
1,691,446 + PGA1_c16280 0.80 +0.8
1,691,474 + PGA1_c16280 0.83 +0.5
1,691,474 + PGA1_c16280 0.83 +0.2
1,691,474 + PGA1_c16280 0.83 -0.8
1,691,474 - PGA1_c16280 0.83 -0.2
1,691,479 + PGA1_c16280 0.83 -0.7
1,691,482 - PGA1_c16280 0.84 -0.0
1,691,531 - PGA1_c16280 0.88 +0.1
1,691,531 - PGA1_c16280 0.88 +0.7
1,691,553 - +0.9
1,691,560 + +0.3
1,691,568 - -0.2
1,691,586 - +0.3
1,691,590 + +0.2
1,691,590 + -1.0
1,691,590 + +1.2

Or see this region's nucleotide sequence