Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3516 and Dsui_3517 overlap by 4 nucleotides Dsui_3517 and Dsui_3518 are separated by 84 nucleotides Dsui_3518 and Dsui_3519 are separated by 72 nucleotides
Dsui_3516: Dsui_3516 - hypothetical protein, at 3,779,723 to 3,781,249
_3516
Dsui_3517: Dsui_3517 - putative membrane protein, at 3,781,246 to 3,782,076
_3517
Dsui_3518: Dsui_3518 - putative membrane protein, at 3,782,161 to 3,782,523
_3518
Dsui_3519: Dsui_3519 - 2-isopropylmalate synthase, bacterial type, at 3,782,596 to 3,784,137
_3519
Position (kb)
3781
3782
3783 Strain fitness (log2 ratio)
-2
-1
0
1 at 3780.294 kb on + strand, within Dsui_3516 at 3780.310 kb on - strand at 3780.310 kb on - strand, within Dsui_3516 at 3780.331 kb on - strand, within Dsui_3516 at 3780.368 kb on - strand, within Dsui_3516 at 3780.427 kb on + strand, within Dsui_3516 at 3780.446 kb on - strand, within Dsui_3516 at 3780.531 kb on - strand, within Dsui_3516 at 3780.585 kb on + strand, within Dsui_3516 at 3780.619 kb on - strand, within Dsui_3516 at 3780.810 kb on + strand, within Dsui_3516 at 3780.818 kb on - strand, within Dsui_3516 at 3780.846 kb on + strand, within Dsui_3516 at 3780.847 kb on + strand, within Dsui_3516 at 3780.854 kb on - strand, within Dsui_3516 at 3780.855 kb on - strand, within Dsui_3516 at 3780.913 kb on + strand, within Dsui_3516 at 3780.915 kb on + strand, within Dsui_3516 at 3780.963 kb on - strand, within Dsui_3516 at 3781.179 kb on + strand at 3781.187 kb on - strand at 3781.207 kb on + strand at 3781.221 kb on - strand at 3781.315 kb on + strand at 3781.327 kb on - strand at 3781.371 kb on + strand, within Dsui_3517 at 3781.379 kb on - strand, within Dsui_3517 at 3781.386 kb on - strand, within Dsui_3517 at 3781.575 kb on + strand, within Dsui_3517 at 3781.605 kb on + strand, within Dsui_3517 at 3781.605 kb on + strand, within Dsui_3517 at 3781.643 kb on + strand, within Dsui_3517 at 3781.728 kb on - strand, within Dsui_3517 at 3781.750 kb on + strand, within Dsui_3517 at 3781.773 kb on + strand, within Dsui_3517 at 3781.773 kb on + strand, within Dsui_3517 at 3781.820 kb on + strand, within Dsui_3517 at 3781.823 kb on - strand, within Dsui_3517 at 3781.829 kb on - strand, within Dsui_3517 at 3781.879 kb on + strand at 3781.880 kb on + strand at 3781.880 kb on + strand, within Dsui_3517 at 3781.880 kb on + strand at 3781.880 kb on + strand, within Dsui_3517 at 3781.888 kb on - strand, within Dsui_3517 at 3781.888 kb on - strand, within Dsui_3517 at 3781.888 kb on - strand, within Dsui_3517 at 3781.888 kb on - strand, within Dsui_3517 at 3781.965 kb on + strand, within Dsui_3517 at 3781.973 kb on + strand, within Dsui_3517 at 3781.973 kb on + strand, within Dsui_3517 at 3781.981 kb on - strand, within Dsui_3517 at 3781.981 kb on - strand, within Dsui_3517 at 3782.015 kb on - strand at 3782.065 kb on - strand at 3782.065 kb on - strand at 3782.065 kb on - strand at 3782.109 kb on + strand at 3782.109 kb on + strand at 3782.122 kb on - strand at 3782.171 kb on + strand at 3782.232 kb on - strand, within Dsui_3518 at 3782.269 kb on - strand, within Dsui_3518 at 3782.325 kb on + strand, within Dsui_3518 at 3782.333 kb on - strand, within Dsui_3518 at 3782.333 kb on - strand, within Dsui_3518 at 3782.369 kb on - strand, within Dsui_3518 at 3782.393 kb on + strand, within Dsui_3518 at 3782.401 kb on - strand, within Dsui_3518 at 3782.404 kb on + strand, within Dsui_3518 at 3782.465 kb on - strand, within Dsui_3518 at 3782.525 kb on + strand at 3782.525 kb on + strand at 3782.526 kb on - strand at 3782.605 kb on + strand at 3782.605 kb on + strand at 3782.630 kb on + strand at 3782.662 kb on + strand at 3782.670 kb on - strand at 3782.671 kb on - strand at 3782.731 kb on - strand at 3782.831 kb on + strand, within Dsui_3519 at 3782.839 kb on + strand, within Dsui_3519 at 3782.839 kb on - strand, within Dsui_3519 at 3782.847 kb on - strand, within Dsui_3519 at 3782.944 kb on - strand, within Dsui_3519 at 3782.976 kb on - strand, within Dsui_3519 at 3783.007 kb on + strand, within Dsui_3519
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 3,780,294 + Dsui_3516 0.37 -0.7 3,780,310 - -0.3 3,780,310 - Dsui_3516 0.38 +0.7 3,780,331 - Dsui_3516 0.40 -0.3 3,780,368 - Dsui_3516 0.42 -1.3 3,780,427 + Dsui_3516 0.46 +0.3 3,780,446 - Dsui_3516 0.47 +0.7 3,780,531 - Dsui_3516 0.53 -0.9 3,780,585 + Dsui_3516 0.56 -0.5 3,780,619 - Dsui_3516 0.59 -0.3 3,780,810 + Dsui_3516 0.71 -0.4 3,780,818 - Dsui_3516 0.72 -0.9 3,780,846 + Dsui_3516 0.74 +0.0 3,780,847 + Dsui_3516 0.74 -0.3 3,780,854 - Dsui_3516 0.74 -0.9 3,780,855 - Dsui_3516 0.74 -2.4 3,780,913 + Dsui_3516 0.78 -0.3 3,780,915 + Dsui_3516 0.78 -1.8 3,780,963 - Dsui_3516 0.81 -1.3 3,781,179 + -1.3 3,781,187 - -1.7 3,781,207 + +0.4 3,781,221 - -0.6 3,781,315 + +0.7 3,781,327 - -1.6 3,781,371 + Dsui_3517 0.15 -0.6 3,781,379 - Dsui_3517 0.16 -0.6 3,781,386 - Dsui_3517 0.17 -1.2 3,781,575 + Dsui_3517 0.40 +0.7 3,781,605 + Dsui_3517 0.43 +0.7 3,781,605 + Dsui_3517 0.43 +0.7 3,781,643 + Dsui_3517 0.48 -0.3 3,781,728 - Dsui_3517 0.58 -1.9 3,781,750 + Dsui_3517 0.61 -0.3 3,781,773 + Dsui_3517 0.63 -0.9 3,781,773 + Dsui_3517 0.63 +0.7 3,781,820 + Dsui_3517 0.69 -0.9 3,781,823 - Dsui_3517 0.69 -1.5 3,781,829 - Dsui_3517 0.70 -0.3 3,781,879 + +0.7 3,781,880 + +0.7 3,781,880 + Dsui_3517 0.76 +0.7 3,781,880 + +0.7 3,781,880 + Dsui_3517 0.76 -0.3 3,781,888 - Dsui_3517 0.77 +1.2 3,781,888 - Dsui_3517 0.77 -1.1 3,781,888 - Dsui_3517 0.77 -0.4 3,781,888 - Dsui_3517 0.77 +0.7 3,781,965 + Dsui_3517 0.87 -0.9 3,781,973 + Dsui_3517 0.87 +0.7 3,781,973 + Dsui_3517 0.87 -0.9 3,781,981 - Dsui_3517 0.88 -0.4 3,781,981 - Dsui_3517 0.88 -1.4 3,782,015 - +0.7 3,782,065 - -0.6 3,782,065 - -1.2 3,782,065 - +1.7 3,782,109 + -2.7 3,782,109 + -0.3 3,782,122 - -1.6 3,782,171 + -0.7 3,782,232 - Dsui_3518 0.20 -0.6 3,782,269 - Dsui_3518 0.30 -1.2 3,782,325 + Dsui_3518 0.45 -0.2 3,782,333 - Dsui_3518 0.47 -0.3 3,782,333 - Dsui_3518 0.47 -0.3 3,782,369 - Dsui_3518 0.57 -0.8 3,782,393 + Dsui_3518 0.64 -0.6 3,782,401 - Dsui_3518 0.66 -1.1 3,782,404 + Dsui_3518 0.67 -0.1 3,782,465 - Dsui_3518 0.84 -0.3 3,782,525 + -0.4 3,782,525 + -0.8 3,782,526 - -0.0 3,782,605 + -0.3 3,782,605 + -0.3 3,782,630 + -0.3 3,782,662 + +0.1 3,782,670 - -0.4 3,782,671 - -0.1 3,782,731 - -0.1 3,782,831 + Dsui_3519 0.15 -0.6 3,782,839 + Dsui_3519 0.16 -0.3 3,782,839 - Dsui_3519 0.16 -0.2 3,782,847 - Dsui_3519 0.16 -0.2 3,782,944 - Dsui_3519 0.23 -0.3 3,782,976 - Dsui_3519 0.25 -0.3 3,783,007 + Dsui_3519 0.27 +0.7
Or see this region's nucleotide sequence