Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3475 and Dsui_3476 are separated by 11 nucleotides Dsui_3476 and Dsui_3477 are separated by 15 nucleotides Dsui_3477 and Dsui_3478 are separated by 246 nucleotides Dsui_3478 and Dsui_3479 are separated by 105 nucleotides
Dsui_3475: Dsui_3475 - methyl-accepting chemotaxis protein, at 3,738,130 to 3,740,301
_3475
Dsui_3476: Dsui_3476 - chemotaxis signal transduction protein, at 3,740,313 to 3,740,831
_3476
Dsui_3477: Dsui_3477 - PAS domain S-box, at 3,740,847 to 3,742,106
_3477
Dsui_3478: Dsui_3478 - hypothetical protein, at 3,742,353 to 3,742,664
_3478
Dsui_3479: Dsui_3479 - single stranded DNA-binding protein, at 3,742,770 to 3,743,264
_3479
Position (kb)
3740
3741
3742
3743 Strain fitness (log2 ratio)
-2
-1
0
1 at 3739.847 kb on - strand, within Dsui_3475 at 3740.005 kb on - strand at 3740.007 kb on + strand, within Dsui_3475 at 3740.303 kb on - strand at 3740.345 kb on - strand at 3740.367 kb on - strand at 3740.382 kb on - strand, within Dsui_3476 at 3740.382 kb on - strand, within Dsui_3476 at 3740.444 kb on + strand, within Dsui_3476 at 3740.485 kb on + strand, within Dsui_3476 at 3740.647 kb on - strand, within Dsui_3476 at 3740.760 kb on + strand at 3740.802 kb on + strand at 3740.810 kb on - strand at 3740.884 kb on + strand at 3740.931 kb on - strand at 3740.934 kb on + strand at 3741.277 kb on + strand, within Dsui_3477 at 3741.282 kb on + strand, within Dsui_3477 at 3741.285 kb on - strand, within Dsui_3477 at 3741.285 kb on - strand, within Dsui_3477 at 3741.285 kb on - strand, within Dsui_3477 at 3741.285 kb on - strand, within Dsui_3477 at 3741.405 kb on - strand at 3741.499 kb on + strand at 3741.581 kb on + strand, within Dsui_3477 at 3741.600 kb on + strand, within Dsui_3477 at 3741.719 kb on + strand, within Dsui_3477 at 3741.819 kb on + strand at 3741.952 kb on + strand, within Dsui_3477 at 3742.035 kb on + strand at 3742.048 kb on + strand at 3742.088 kb on + strand at 3742.096 kb on - strand at 3742.105 kb on + strand at 3742.118 kb on - strand at 3742.169 kb on + strand at 3742.172 kb on - strand at 3742.252 kb on + strand at 3742.252 kb on + strand at 3742.260 kb on - strand at 3742.260 kb on - strand at 3742.294 kb on - strand at 3742.296 kb on + strand at 3742.304 kb on - strand at 3742.318 kb on + strand at 3742.326 kb on - strand at 3742.326 kb on - strand at 3742.328 kb on + strand at 3742.331 kb on - strand at 3742.559 kb on + strand, within Dsui_3478 at 3742.586 kb on - strand, within Dsui_3478 at 3742.656 kb on - strand at 3742.658 kb on + strand at 3742.688 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 3,739,847 - Dsui_3475 0.79 -1.3 3,740,005 - +0.7 3,740,007 + Dsui_3475 0.86 -1.9 3,740,303 - +0.7 3,740,345 - -1.6 3,740,367 - +0.7 3,740,382 - Dsui_3476 0.13 +0.7 3,740,382 - Dsui_3476 0.13 +0.7 3,740,444 + Dsui_3476 0.25 +0.7 3,740,485 + Dsui_3476 0.33 -0.3 3,740,647 - Dsui_3476 0.64 +0.7 3,740,760 + +0.7 3,740,802 + -0.9 3,740,810 - +0.7 3,740,884 + +0.7 3,740,931 - -0.3 3,740,934 + +0.7 3,741,277 + Dsui_3477 0.34 -2.7 3,741,282 + Dsui_3477 0.35 -2.7 3,741,285 - Dsui_3477 0.35 -1.3 3,741,285 - Dsui_3477 0.35 -0.3 3,741,285 - Dsui_3477 0.35 +0.7 3,741,285 - Dsui_3477 0.35 -0.3 3,741,405 - +0.7 3,741,499 + +0.7 3,741,581 + Dsui_3477 0.58 -0.3 3,741,600 + Dsui_3477 0.60 +0.7 3,741,719 + Dsui_3477 0.69 -0.9 3,741,819 + +0.7 3,741,952 + Dsui_3477 0.88 -1.9 3,742,035 + -1.3 3,742,048 + +0.7 3,742,088 + +0.7 3,742,096 - -0.3 3,742,105 + -1.9 3,742,118 - +0.7 3,742,169 + -0.9 3,742,172 - -2.4 3,742,252 + -0.9 3,742,252 + -0.3 3,742,260 - -1.3 3,742,260 - +0.7 3,742,294 - +0.7 3,742,296 + -0.3 3,742,304 - +0.7 3,742,318 + +0.7 3,742,326 - -2.1 3,742,326 - -0.9 3,742,328 + +0.7 3,742,331 - +0.7 3,742,559 + Dsui_3478 0.66 -1.9 3,742,586 - Dsui_3478 0.75 -2.1 3,742,656 - +0.7 3,742,658 + -0.9 3,742,688 - +0.7
Or see this region's nucleotide sequence