Strain Fitness in Dechlorosoma suillum PS around Dsui_3469

Experiment: ALP with Dimethyl Sulfoxide 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3468 and Dsui_3469 overlap by 4 nucleotidesDsui_3469 and Dsui_3470 are separated by 195 nucleotidesDsui_3470 and Dsui_3471 overlap by 4 nucleotides Dsui_3468: Dsui_3468 - Response regulator receiver domain protein,histidine kinase, at 3,731,620 to 3,732,789 _3468 Dsui_3469: Dsui_3469 - response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 3,732,786 to 3,733,415 _3469 Dsui_3470: Dsui_3470 - response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 3,733,611 to 3,734,009 _3470 Dsui_3471: Dsui_3471 - methyl-accepting chemotaxis protein, at 3,734,006 to 3,735,151 _3471 Position (kb) 3732 3733 3734Strain fitness (log2 ratio) -2 -1 0 1at 3731.844 kb on + strand, within Dsui_3468at 3731.852 kb on - strandat 3731.881 kb on + strand, within Dsui_3468at 3731.961 kb on + strand, within Dsui_3468at 3732.001 kb on - strandat 3732.307 kb on + strand, within Dsui_3468at 3732.315 kb on - strand, within Dsui_3468at 3732.409 kb on + strand, within Dsui_3468at 3732.513 kb on + strand, within Dsui_3468at 3732.545 kb on - strandat 3732.550 kb on - strand, within Dsui_3468at 3732.570 kb on + strand, within Dsui_3468at 3732.627 kb on + strand, within Dsui_3468at 3732.643 kb on - strandat 3732.659 kb on - strandat 3732.665 kb on + strand, within Dsui_3468at 3732.900 kb on + strand, within Dsui_3469at 3732.970 kb on + strand, within Dsui_3469at 3733.063 kb on - strand, within Dsui_3469at 3733.324 kb on - strand, within Dsui_3469at 3733.386 kb on + strandat 3733.394 kb on - strandat 3733.542 kb on - strandat 3734.045 kb on - strandat 3734.045 kb on - strandat 3734.072 kb on - strandat 3734.137 kb on + strandat 3734.209 kb on + strandat 3734.279 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol%
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3,731,844 + Dsui_3468 0.19 +0.1
3,731,852 - +0.7
3,731,881 + Dsui_3468 0.22 -0.4
3,731,961 + Dsui_3468 0.29 -0.6
3,732,001 - +0.7
3,732,307 + Dsui_3468 0.59 -1.3
3,732,315 - Dsui_3468 0.59 -0.3
3,732,409 + Dsui_3468 0.67 -1.0
3,732,513 + Dsui_3468 0.76 -1.6
3,732,545 - -0.9
3,732,550 - Dsui_3468 0.79 -0.3
3,732,570 + Dsui_3468 0.81 -1.9
3,732,627 + Dsui_3468 0.86 -1.6
3,732,643 - +0.7
3,732,659 - +0.7
3,732,665 + Dsui_3468 0.89 -1.6
3,732,900 + Dsui_3469 0.18 -0.3
3,732,970 + Dsui_3469 0.29 -0.3
3,733,063 - Dsui_3469 0.44 -0.9
3,733,324 - Dsui_3469 0.85 -1.3
3,733,386 + +0.7
3,733,394 - +0.7
3,733,542 - +0.7
3,734,045 - +0.7
3,734,045 - +0.7
3,734,072 - +0.7
3,734,137 + +0.7
3,734,209 + -0.3
3,734,279 - +0.7

Or see this region's nucleotide sequence