Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3468 and Dsui_3469 overlap by 4 nucleotides Dsui_3469 and Dsui_3470 are separated by 195 nucleotides Dsui_3470 and Dsui_3471 overlap by 4 nucleotides
Dsui_3468: Dsui_3468 - Response regulator receiver domain protein,histidine kinase, at 3,731,620 to 3,732,789
_3468
Dsui_3469: Dsui_3469 - response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 3,732,786 to 3,733,415
_3469
Dsui_3470: Dsui_3470 - response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 3,733,611 to 3,734,009
_3470
Dsui_3471: Dsui_3471 - methyl-accepting chemotaxis protein, at 3,734,006 to 3,735,151
_3471
Position (kb)
3732
3733
3734 Strain fitness (log2 ratio)
-2
-1
0
1 at 3731.844 kb on + strand, within Dsui_3468 at 3731.852 kb on - strand at 3731.881 kb on + strand, within Dsui_3468 at 3731.961 kb on + strand, within Dsui_3468 at 3732.001 kb on - strand at 3732.307 kb on + strand, within Dsui_3468 at 3732.315 kb on - strand, within Dsui_3468 at 3732.409 kb on + strand, within Dsui_3468 at 3732.513 kb on + strand, within Dsui_3468 at 3732.545 kb on - strand at 3732.550 kb on - strand, within Dsui_3468 at 3732.570 kb on + strand, within Dsui_3468 at 3732.627 kb on + strand, within Dsui_3468 at 3732.643 kb on - strand at 3732.659 kb on - strand at 3732.665 kb on + strand, within Dsui_3468 at 3732.900 kb on + strand, within Dsui_3469 at 3732.970 kb on + strand, within Dsui_3469 at 3733.063 kb on - strand, within Dsui_3469 at 3733.324 kb on - strand, within Dsui_3469 at 3733.386 kb on + strand at 3733.394 kb on - strand at 3733.542 kb on - strand at 3734.045 kb on - strand at 3734.045 kb on - strand at 3734.072 kb on - strand at 3734.137 kb on + strand at 3734.209 kb on + strand at 3734.279 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 3,731,844 + Dsui_3468 0.19 +0.1 3,731,852 - +0.7 3,731,881 + Dsui_3468 0.22 -0.4 3,731,961 + Dsui_3468 0.29 -0.6 3,732,001 - +0.7 3,732,307 + Dsui_3468 0.59 -1.3 3,732,315 - Dsui_3468 0.59 -0.3 3,732,409 + Dsui_3468 0.67 -1.0 3,732,513 + Dsui_3468 0.76 -1.6 3,732,545 - -0.9 3,732,550 - Dsui_3468 0.79 -0.3 3,732,570 + Dsui_3468 0.81 -1.9 3,732,627 + Dsui_3468 0.86 -1.6 3,732,643 - +0.7 3,732,659 - +0.7 3,732,665 + Dsui_3468 0.89 -1.6 3,732,900 + Dsui_3469 0.18 -0.3 3,732,970 + Dsui_3469 0.29 -0.3 3,733,063 - Dsui_3469 0.44 -0.9 3,733,324 - Dsui_3469 0.85 -1.3 3,733,386 + +0.7 3,733,394 - +0.7 3,733,542 - +0.7 3,734,045 - +0.7 3,734,045 - +0.7 3,734,072 - +0.7 3,734,137 + +0.7 3,734,209 + -0.3 3,734,279 - +0.7
Or see this region's nucleotide sequence