Strain Fitness in Dechlorosoma suillum PS around Dsui_3454

Experiment: ALP with Dimethyl Sulfoxide 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3453 and Dsui_3454 are separated by 85 nucleotidesDsui_3454 and Dsui_3455 are separated by 76 nucleotides Dsui_3453: Dsui_3453 - cation diffusion facilitator family transporter, at 3,713,933 to 3,714,841 _3453 Dsui_3454: Dsui_3454 - phospholipid-binding protein, at 3,714,927 to 3,715,343 _3454 Dsui_3455: Dsui_3455 - HD-GYP domain-containing protein, at 3,715,420 to 3,718,395 _3455 Position (kb) 3714 3715 3716Strain fitness (log2 ratio) -2 -1 0 1at 3714.032 kb on - strand, within Dsui_3453at 3714.104 kb on - strand, within Dsui_3453at 3714.217 kb on + strand, within Dsui_3453at 3714.477 kb on + strand, within Dsui_3453at 3714.628 kb on + strand, within Dsui_3453at 3714.821 kb on + strandat 3715.036 kb on + strand, within Dsui_3454at 3715.180 kb on - strand, within Dsui_3454at 3715.326 kb on + strandat 3715.332 kb on + strandat 3715.458 kb on + strandat 3715.492 kb on + strandat 3715.492 kb on + strandat 3715.497 kb on + strandat 3715.524 kb on + strandat 3715.524 kb on + strandat 3715.568 kb on - strandat 3715.582 kb on - strandat 3715.617 kb on - strandat 3715.654 kb on - strandat 3715.747 kb on + strand, within Dsui_3455at 3715.854 kb on + strand, within Dsui_3455at 3716.042 kb on + strand, within Dsui_3455at 3716.145 kb on + strand, within Dsui_3455at 3716.217 kb on - strandat 3716.280 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol%
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3,714,032 - Dsui_3453 0.11 -0.3
3,714,104 - Dsui_3453 0.19 -1.6
3,714,217 + Dsui_3453 0.31 +0.0
3,714,477 + Dsui_3453 0.60 -0.5
3,714,628 + Dsui_3453 0.76 -0.6
3,714,821 + +1.4
3,715,036 + Dsui_3454 0.26 +0.7
3,715,180 - Dsui_3454 0.61 +0.7
3,715,326 + +0.7
3,715,332 + +0.7
3,715,458 + +0.7
3,715,492 + -0.3
3,715,492 + -2.3
3,715,497 + +0.7
3,715,524 + +0.7
3,715,524 + -1.9
3,715,568 - +0.7
3,715,582 - -0.9
3,715,617 - -1.3
3,715,654 - -0.9
3,715,747 + Dsui_3455 0.11 -0.3
3,715,854 + Dsui_3455 0.15 -0.9
3,716,042 + Dsui_3455 0.21 -2.4
3,716,145 + Dsui_3455 0.24 +0.7
3,716,217 - -0.3
3,716,280 + +0.7

Or see this region's nucleotide sequence