Strain Fitness in Dechlorosoma suillum PS around Dsui_3452

Experiment: ALP with Dimethyl Sulfoxide 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3451 and Dsui_3452 are separated by 172 nucleotidesDsui_3452 and Dsui_3453 are separated by 9 nucleotides Dsui_3451: Dsui_3451 - sugar phosphate permease, at 3,711,976 to 3,713,259 _3451 Dsui_3452: Dsui_3452 - cytidyltransferase-related enzyme, at 3,713,432 to 3,713,923 _3452 Dsui_3453: Dsui_3453 - cation diffusion facilitator family transporter, at 3,713,933 to 3,714,841 _3453 Position (kb) 3713 3714Strain fitness (log2 ratio) -2 -1 0 1at 3712.452 kb on + strand, within Dsui_3451at 3712.487 kb on - strand, within Dsui_3451at 3712.494 kb on + strand, within Dsui_3451at 3712.519 kb on + strand, within Dsui_3451at 3712.608 kb on - strand, within Dsui_3451at 3712.655 kb on + strand, within Dsui_3451at 3712.655 kb on + strand, within Dsui_3451at 3712.716 kb on - strand, within Dsui_3451at 3712.930 kb on + strand, within Dsui_3451at 3712.941 kb on + strandat 3713.027 kb on - strand, within Dsui_3451at 3713.027 kb on - strand, within Dsui_3451at 3713.070 kb on - strand, within Dsui_3451at 3713.122 kb on + strandat 3713.133 kb on + strandat 3713.135 kb on - strandat 3713.220 kb on - strandat 3713.273 kb on - strandat 3713.319 kb on - strandat 3713.347 kb on + strandat 3713.918 kb on + strandat 3713.926 kb on - strandat 3714.032 kb on - strand, within Dsui_3453at 3714.104 kb on - strand, within Dsui_3453at 3714.217 kb on + strand, within Dsui_3453at 3714.477 kb on + strand, within Dsui_3453at 3714.628 kb on + strand, within Dsui_3453at 3714.821 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol%
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3,712,452 + Dsui_3451 0.37 -0.9
3,712,487 - Dsui_3451 0.40 +0.7
3,712,494 + Dsui_3451 0.40 +0.7
3,712,519 + Dsui_3451 0.42 +0.7
3,712,608 - Dsui_3451 0.49 -0.9
3,712,655 + Dsui_3451 0.53 -2.3
3,712,655 + Dsui_3451 0.53 +1.7
3,712,716 - Dsui_3451 0.58 -1.3
3,712,930 + Dsui_3451 0.74 -1.9
3,712,941 + +0.7
3,713,027 - Dsui_3451 0.82 -0.3
3,713,027 - Dsui_3451 0.82 -2.1
3,713,070 - Dsui_3451 0.85 -0.3
3,713,122 + -0.9
3,713,133 + -2.4
3,713,135 - -2.1
3,713,220 - -0.3
3,713,273 - -1.4
3,713,319 - -1.6
3,713,347 + -0.9
3,713,918 + -0.2
3,713,926 - -0.3
3,714,032 - Dsui_3453 0.11 -0.3
3,714,104 - Dsui_3453 0.19 -1.6
3,714,217 + Dsui_3453 0.31 +0.0
3,714,477 + Dsui_3453 0.60 -0.5
3,714,628 + Dsui_3453 0.76 -0.6
3,714,821 + +1.4

Or see this region's nucleotide sequence