Strain Fitness in Dechlorosoma suillum PS around Dsui_3395

Experiment: ALP with Dimethyl Sulfoxide 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3394 and Dsui_3395 are separated by 64 nucleotidesDsui_3395 and Dsui_3396 are separated by 134 nucleotides Dsui_3394: Dsui_3394 - P-type ATPase, translocating, at 3,638,585 to 3,641,332 _3394 Dsui_3395: Dsui_3395 - arabinose efflux permease family protein, at 3,641,397 to 3,642,602 _3395 Dsui_3396: Dsui_3396 - transcriptional regulator, at 3,642,737 to 3,643,609 _3396 Position (kb) 3641 3642 3643Strain fitness (log2 ratio) -2 -1 0 1at 3640.537 kb on + strand, within Dsui_3394at 3640.783 kb on - strand, within Dsui_3394at 3640.793 kb on - strandat 3640.845 kb on + strand, within Dsui_3394at 3640.976 kb on + strandat 3641.042 kb on + strand, within Dsui_3394at 3641.063 kb on - strandat 3641.095 kb on - strandat 3641.173 kb on + strandat 3641.190 kb on + strandat 3641.272 kb on + strandat 3641.358 kb on + strandat 3641.366 kb on - strandat 3641.371 kb on + strandat 3641.380 kb on - strandat 3641.630 kb on + strandat 3641.696 kb on - strandat 3641.713 kb on + strandat 3641.747 kb on - strandat 3641.945 kb on + strandat 3642.003 kb on + strandat 3642.021 kb on - strandat 3642.261 kb on + strandat 3642.307 kb on + strandat 3642.376 kb on - strandat 3642.386 kb on - strand, within Dsui_3395at 3642.573 kb on - strandat 3642.628 kb on + strandat 3642.648 kb on + strandat 3642.656 kb on - strandat 3642.770 kb on - strandat 3642.888 kb on + strand, within Dsui_3396at 3642.949 kb on + strandat 3643.011 kb on + strandat 3643.036 kb on - strandat 3643.103 kb on + strand, within Dsui_3396at 3643.261 kb on + strand, within Dsui_3396at 3643.262 kb on + strand, within Dsui_3396at 3643.361 kb on + strand, within Dsui_3396

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol%
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3,640,537 + Dsui_3394 0.71 -2.1
3,640,783 - Dsui_3394 0.80 -0.5
3,640,793 - +1.7
3,640,845 + Dsui_3394 0.82 +0.7
3,640,976 + +0.7
3,641,042 + Dsui_3394 0.89 -0.9
3,641,063 - -0.5
3,641,095 - +0.1
3,641,173 + +0.7
3,641,190 + -0.9
3,641,272 + +0.7
3,641,358 + +0.7
3,641,366 - +0.1
3,641,371 + -1.3
3,641,380 - +0.7
3,641,630 + +0.7
3,641,696 - +0.7
3,641,713 + -0.9
3,641,747 - +0.7
3,641,945 + +0.7
3,642,003 + +0.7
3,642,021 - -0.3
3,642,261 + +0.7
3,642,307 + +0.7
3,642,376 - +0.7
3,642,386 - Dsui_3395 0.82 -0.3
3,642,573 - -2.3
3,642,628 + +0.7
3,642,648 + -1.9
3,642,656 - -0.9
3,642,770 - +0.7
3,642,888 + Dsui_3396 0.17 -2.1
3,642,949 + +0.7
3,643,011 + +0.7
3,643,036 - +0.7
3,643,103 + Dsui_3396 0.42 -1.7
3,643,261 + Dsui_3396 0.60 -1.3
3,643,262 + Dsui_3396 0.60 +0.3
3,643,361 + Dsui_3396 0.71 +0.7

Or see this region's nucleotide sequence