Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3236 and Dsui_3237 are separated by 244 nucleotides Dsui_3237 and Dsui_3238 are separated by 73 nucleotides
Dsui_3236: Dsui_3236 - hypothetical protein, at 3,477,721 to 3,479,136
_3236
Dsui_3237: Dsui_3237 - methyl-accepting chemotaxis protein, at 3,479,381 to 3,481,024
_3237
Dsui_3238: Dsui_3238 - PAS domain S-box, at 3,481,098 to 3,482,726
_3238
Position (kb)
3479
3480
3481
3482 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3478.397 kb on - strand, within Dsui_3236 at 3478.434 kb on - strand, within Dsui_3236 at 3478.487 kb on - strand, within Dsui_3236 at 3478.615 kb on + strand, within Dsui_3236 at 3478.635 kb on + strand, within Dsui_3236 at 3478.693 kb on + strand, within Dsui_3236 at 3478.706 kb on - strand, within Dsui_3236 at 3478.725 kb on - strand, within Dsui_3236 at 3478.737 kb on + strand at 3478.745 kb on - strand, within Dsui_3236 at 3478.745 kb on - strand, within Dsui_3236 at 3478.796 kb on - strand, within Dsui_3236 at 3478.805 kb on + strand, within Dsui_3236 at 3478.826 kb on + strand, within Dsui_3236 at 3478.856 kb on + strand, within Dsui_3236 at 3478.869 kb on + strand, within Dsui_3236 at 3478.877 kb on - strand, within Dsui_3236 at 3478.939 kb on - strand, within Dsui_3236 at 3478.949 kb on + strand, within Dsui_3236 at 3478.957 kb on - strand, within Dsui_3236 at 3479.045 kb on - strand at 3479.077 kb on - strand at 3479.077 kb on - strand at 3479.129 kb on - strand at 3479.159 kb on - strand at 3479.265 kb on + strand at 3479.265 kb on - strand at 3479.269 kb on + strand at 3479.507 kb on + strand at 3479.520 kb on + strand at 3479.597 kb on + strand, within Dsui_3237 at 3479.605 kb on - strand, within Dsui_3237 at 3479.605 kb on - strand, within Dsui_3237 at 3479.696 kb on - strand, within Dsui_3237 at 3479.739 kb on - strand, within Dsui_3237 at 3479.947 kb on - strand, within Dsui_3237 at 3480.119 kb on + strand, within Dsui_3237 at 3480.142 kb on + strand, within Dsui_3237 at 3480.158 kb on - strand, within Dsui_3237 at 3480.303 kb on - strand, within Dsui_3237 at 3480.309 kb on + strand, within Dsui_3237 at 3480.351 kb on + strand, within Dsui_3237 at 3480.359 kb on - strand, within Dsui_3237 at 3480.458 kb on - strand, within Dsui_3237 at 3480.494 kb on - strand, within Dsui_3237 at 3480.508 kb on + strand, within Dsui_3237 at 3480.722 kb on + strand, within Dsui_3237 at 3480.745 kb on + strand, within Dsui_3237 at 3480.825 kb on + strand, within Dsui_3237 at 3480.825 kb on + strand, within Dsui_3237 at 3480.946 kb on - strand at 3480.951 kb on - strand at 3480.991 kb on + strand at 3481.132 kb on + strand at 3481.134 kb on - strand at 3481.274 kb on - strand, within Dsui_3238 at 3481.311 kb on - strand, within Dsui_3238 at 3481.328 kb on - strand, within Dsui_3238 at 3481.340 kb on + strand at 3481.348 kb on - strand, within Dsui_3238 at 3481.385 kb on - strand, within Dsui_3238 at 3481.581 kb on + strand, within Dsui_3238 at 3481.666 kb on - strand, within Dsui_3238 at 3481.762 kb on + strand, within Dsui_3238 at 3481.786 kb on + strand, within Dsui_3238 at 3481.794 kb on - strand, within Dsui_3238 at 3481.804 kb on - strand, within Dsui_3238 at 3481.894 kb on - strand, within Dsui_3238 at 3481.964 kb on + strand, within Dsui_3238 at 3482.020 kb on + strand, within Dsui_3238
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 3,478,397 - Dsui_3236 0.48 +0.7 3,478,434 - Dsui_3236 0.50 -0.3 3,478,487 - Dsui_3236 0.54 -0.9 3,478,615 + Dsui_3236 0.63 -2.8 3,478,635 + Dsui_3236 0.65 +0.7 3,478,693 + Dsui_3236 0.69 -1.6 3,478,706 - Dsui_3236 0.70 -1.3 3,478,725 - Dsui_3236 0.71 +0.7 3,478,737 + +0.7 3,478,745 - Dsui_3236 0.72 -0.9 3,478,745 - Dsui_3236 0.72 -0.9 3,478,796 - Dsui_3236 0.76 -0.9 3,478,805 + Dsui_3236 0.77 +0.7 3,478,826 + Dsui_3236 0.78 -2.1 3,478,856 + Dsui_3236 0.80 +0.7 3,478,869 + Dsui_3236 0.81 -1.6 3,478,877 - Dsui_3236 0.82 -0.9 3,478,939 - Dsui_3236 0.86 -0.9 3,478,949 + Dsui_3236 0.87 +0.7 3,478,957 - Dsui_3236 0.87 -3.0 3,479,045 - -1.3 3,479,077 - -0.9 3,479,077 - +0.7 3,479,129 - -0.3 3,479,159 - +0.7 3,479,265 + -0.3 3,479,265 - -0.9 3,479,269 + -1.3 3,479,507 + +0.7 3,479,520 + -0.9 3,479,597 + Dsui_3237 0.13 -0.9 3,479,605 - Dsui_3237 0.14 +0.7 3,479,605 - Dsui_3237 0.14 -0.9 3,479,696 - Dsui_3237 0.19 -0.3 3,479,739 - Dsui_3237 0.22 -1.9 3,479,947 - Dsui_3237 0.34 +0.7 3,480,119 + Dsui_3237 0.45 -1.3 3,480,142 + Dsui_3237 0.46 +0.7 3,480,158 - Dsui_3237 0.47 -0.3 3,480,303 - Dsui_3237 0.56 -0.3 3,480,309 + Dsui_3237 0.56 -0.3 3,480,351 + Dsui_3237 0.59 +0.7 3,480,359 - Dsui_3237 0.59 +0.7 3,480,458 - Dsui_3237 0.66 -2.3 3,480,494 - Dsui_3237 0.68 +0.7 3,480,508 + Dsui_3237 0.69 +0.7 3,480,722 + Dsui_3237 0.82 -0.9 3,480,745 + Dsui_3237 0.83 +0.7 3,480,825 + Dsui_3237 0.88 -0.3 3,480,825 + Dsui_3237 0.88 -3.3 3,480,946 - +0.7 3,480,951 - -1.6 3,480,991 + +0.7 3,481,132 + +0.7 3,481,134 - -1.1 3,481,274 - Dsui_3238 0.11 -0.9 3,481,311 - Dsui_3238 0.13 -2.3 3,481,328 - Dsui_3238 0.14 -0.3 3,481,340 + +0.7 3,481,348 - Dsui_3238 0.15 -1.6 3,481,385 - Dsui_3238 0.18 -0.6 3,481,581 + Dsui_3238 0.30 -0.3 3,481,666 - Dsui_3238 0.35 -1.3 3,481,762 + Dsui_3238 0.41 -0.3 3,481,786 + Dsui_3238 0.42 -2.3 3,481,794 - Dsui_3238 0.43 -1.6 3,481,804 - Dsui_3238 0.43 -0.3 3,481,894 - Dsui_3238 0.49 -2.6 3,481,964 + Dsui_3238 0.53 -0.3 3,482,020 + Dsui_3238 0.57 +0.7
Or see this region's nucleotide sequence