Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3203 and Dsui_3204 are separated by 68 nucleotides Dsui_3204 and Dsui_3205 are separated by 90 nucleotides Dsui_3205 and Dsui_3206 are separated by 80 nucleotides
Dsui_3203: Dsui_3203 - arabinose efflux permease family protein, at 3,438,650 to 3,439,816
_3203
Dsui_3204: Dsui_3204 - chorismate synthase, at 3,439,885 to 3,440,991
_3204
Dsui_3205: Dsui_3205 - pseudouridine synthase, RluA family, at 3,441,082 to 3,441,735
_3205
Dsui_3206: Dsui_3206 - putative metal-binding protein, at 3,441,816 to 3,442,232
_3206
Position (kb)
3439
3440
3441 Strain fitness (log2 ratio)
-2
-1
0
1 at 3438.906 kb on - strand, within Dsui_3203 at 3439.156 kb on + strand at 3439.202 kb on - strand, within Dsui_3203 at 3439.326 kb on - strand, within Dsui_3203 at 3439.443 kb on + strand at 3439.486 kb on - strand, within Dsui_3203 at 3439.513 kb on - strand, within Dsui_3203 at 3439.575 kb on - strand, within Dsui_3203 at 3439.669 kb on - strand, within Dsui_3203 at 3439.676 kb on + strand at 3441.044 kb on - strand at 3441.175 kb on - strand, within Dsui_3205 at 3441.175 kb on - strand, within Dsui_3205 at 3441.181 kb on - strand, within Dsui_3205 at 3441.186 kb on - strand, within Dsui_3205 at 3441.339 kb on - strand, within Dsui_3205 at 3441.396 kb on - strand, within Dsui_3205 at 3441.396 kb on - strand, within Dsui_3205 at 3441.534 kb on + strand at 3441.534 kb on + strand, within Dsui_3205 at 3441.557 kb on - strand, within Dsui_3205 at 3441.574 kb on - strand, within Dsui_3205 at 3441.614 kb on + strand at 3441.694 kb on - strand at 3441.697 kb on + strand at 3441.697 kb on + strand at 3441.781 kb on - strand at 3441.942 kb on + strand, within Dsui_3206
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 3,438,906 - Dsui_3203 0.22 -1.3 3,439,156 + -0.3 3,439,202 - Dsui_3203 0.47 -0.6 3,439,326 - Dsui_3203 0.58 -0.3 3,439,443 + +0.7 3,439,486 - Dsui_3203 0.72 -0.3 3,439,513 - Dsui_3203 0.74 +0.7 3,439,575 - Dsui_3203 0.79 +0.7 3,439,669 - Dsui_3203 0.87 -0.1 3,439,676 + +0.7 3,441,044 - -1.3 3,441,175 - Dsui_3205 0.14 +0.2 3,441,175 - Dsui_3205 0.14 -0.5 3,441,181 - Dsui_3205 0.15 -0.3 3,441,186 - Dsui_3205 0.16 -0.5 3,441,339 - Dsui_3205 0.39 -0.6 3,441,396 - Dsui_3205 0.48 -0.2 3,441,396 - Dsui_3205 0.48 +0.2 3,441,534 + +0.7 3,441,534 + Dsui_3205 0.69 -1.9 3,441,557 - Dsui_3205 0.73 -0.0 3,441,574 - Dsui_3205 0.75 -0.3 3,441,614 + +0.7 3,441,694 - +0.0 3,441,697 + +0.7 3,441,697 + -0.3 3,441,781 - +0.7 3,441,942 + Dsui_3206 0.30 -0.9
Or see this region's nucleotide sequence