Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3167 and Dsui_3168 overlap by 16 nucleotides Dsui_3168 and Dsui_3169 are separated by 202 nucleotides Dsui_3169 and Dsui_3170 are separated by 111 nucleotides
Dsui_3167: Dsui_3167 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,395,246 to 3,397,426
_3167
Dsui_3168: Dsui_3168 - hypothetical protein, at 3,397,411 to 3,398,565
_3168
Dsui_3169: Dsui_3169 - putative metal-binding protein, at 3,398,768 to 3,399,268
_3169
Dsui_3170: Dsui_3170 - PilZ domain-containing protein, at 3,399,380 to 3,400,111
_3170
Position (kb)
3397
3398
3399 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3396.422 kb on - strand, within Dsui_3167 at 3396.422 kb on - strand, within Dsui_3167 at 3396.422 kb on - strand, within Dsui_3167 at 3396.470 kb on - strand at 3396.473 kb on + strand at 3396.481 kb on - strand, within Dsui_3167 at 3396.625 kb on + strand at 3396.631 kb on + strand at 3396.750 kb on + strand at 3396.825 kb on - strand, within Dsui_3167 at 3396.873 kb on - strand, within Dsui_3167 at 3396.919 kb on - strand, within Dsui_3167 at 3397.007 kb on - strand, within Dsui_3167 at 3397.007 kb on - strand, within Dsui_3167 at 3397.148 kb on - strand, within Dsui_3167 at 3397.312 kb on - strand at 3397.380 kb on - strand at 3397.386 kb on - strand at 3397.392 kb on + strand at 3397.450 kb on - strand at 3397.478 kb on - strand at 3397.478 kb on - strand at 3397.509 kb on + strand at 3397.509 kb on + strand at 3397.509 kb on + strand at 3397.566 kb on + strand at 3397.588 kb on + strand at 3397.724 kb on - strand, within Dsui_3168 at 3397.778 kb on - strand at 3397.911 kb on - strand, within Dsui_3168 at 3398.250 kb on - strand, within Dsui_3168 at 3398.313 kb on - strand, within Dsui_3168 at 3398.355 kb on - strand, within Dsui_3168 at 3398.563 kb on - strand at 3398.614 kb on + strand at 3398.630 kb on + strand at 3398.742 kb on + strand at 3398.810 kb on - strand at 3398.916 kb on + strand, within Dsui_3169 at 3398.948 kb on - strand, within Dsui_3169 at 3399.041 kb on - strand at 3399.091 kb on - strand at 3399.201 kb on + strand, within Dsui_3169 at 3399.239 kb on + strand at 3399.296 kb on + strand at 3399.317 kb on + strand at 3399.329 kb on + strand at 3399.474 kb on + strand, within Dsui_3170 at 3399.514 kb on + strand, within Dsui_3170
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 3,396,422 - Dsui_3167 0.54 -2.9 3,396,422 - Dsui_3167 0.54 -1.5 3,396,422 - Dsui_3167 0.54 -2.2 3,396,470 - -0.3 3,396,473 + -0.3 3,396,481 - Dsui_3167 0.57 -1.3 3,396,625 + -0.3 3,396,631 + -0.3 3,396,750 + -0.9 3,396,825 - Dsui_3167 0.72 -1.6 3,396,873 - Dsui_3167 0.75 +0.7 3,396,919 - Dsui_3167 0.77 -1.9 3,397,007 - Dsui_3167 0.81 -1.6 3,397,007 - Dsui_3167 0.81 -1.9 3,397,148 - Dsui_3167 0.87 -1.8 3,397,312 - -1.7 3,397,380 - -1.7 3,397,386 - +0.7 3,397,392 + -0.3 3,397,450 - +0.7 3,397,478 - -1.7 3,397,478 - -0.6 3,397,509 + -0.9 3,397,509 + -0.3 3,397,509 + +0.7 3,397,566 + -0.9 3,397,588 + +0.7 3,397,724 - Dsui_3168 0.27 -1.5 3,397,778 - +1.7 3,397,911 - Dsui_3168 0.43 +0.3 3,398,250 - Dsui_3168 0.73 -1.5 3,398,313 - Dsui_3168 0.78 +1.1 3,398,355 - Dsui_3168 0.82 -2.1 3,398,563 - +2.3 3,398,614 + -0.6 3,398,630 + -1.6 3,398,742 + -0.1 3,398,810 - +0.7 3,398,916 + Dsui_3169 0.30 -0.0 3,398,948 - Dsui_3169 0.36 -0.3 3,399,041 - +0.7 3,399,091 - +0.7 3,399,201 + Dsui_3169 0.86 -0.5 3,399,239 + -0.7 3,399,296 + -0.3 3,399,317 + -0.3 3,399,329 + -0.3 3,399,474 + Dsui_3170 0.13 -0.1 3,399,514 + Dsui_3170 0.18 -0.7
Or see this region's nucleotide sequence