Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3166 and Dsui_3167 are separated by 93 nucleotides Dsui_3167 and Dsui_3168 overlap by 16 nucleotides
Dsui_3166: Dsui_3166 - acetyl-CoA carboxylase, carboxyl transferase, alpha subunit, at 3,394,184 to 3,395,152
_3166
Dsui_3167: Dsui_3167 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,395,246 to 3,397,426
_3167
Dsui_3168: Dsui_3168 - hypothetical protein, at 3,397,411 to 3,398,565
_3168
Position (kb)
3395
3396
3397
3398 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3395.251 kb on - strand at 3395.400 kb on - strand at 3395.517 kb on - strand, within Dsui_3167 at 3395.517 kb on - strand, within Dsui_3167 at 3395.606 kb on - strand, within Dsui_3167 at 3395.647 kb on + strand, within Dsui_3167 at 3395.657 kb on + strand, within Dsui_3167 at 3395.660 kb on - strand, within Dsui_3167 at 3395.660 kb on - strand, within Dsui_3167 at 3395.665 kb on - strand, within Dsui_3167 at 3395.925 kb on - strand, within Dsui_3167 at 3395.975 kb on - strand, within Dsui_3167 at 3396.067 kb on + strand at 3396.137 kb on + strand at 3396.266 kb on - strand, within Dsui_3167 at 3396.371 kb on + strand at 3396.373 kb on - strand, within Dsui_3167 at 3396.422 kb on - strand, within Dsui_3167 at 3396.422 kb on - strand, within Dsui_3167 at 3396.422 kb on - strand, within Dsui_3167 at 3396.470 kb on - strand at 3396.473 kb on + strand at 3396.481 kb on - strand, within Dsui_3167 at 3396.625 kb on + strand at 3396.631 kb on + strand at 3396.750 kb on + strand at 3396.825 kb on - strand, within Dsui_3167 at 3396.873 kb on - strand, within Dsui_3167 at 3396.919 kb on - strand, within Dsui_3167 at 3397.007 kb on - strand, within Dsui_3167 at 3397.007 kb on - strand, within Dsui_3167 at 3397.148 kb on - strand, within Dsui_3167 at 3397.312 kb on - strand at 3397.380 kb on - strand at 3397.386 kb on - strand at 3397.392 kb on + strand at 3397.450 kb on - strand at 3397.478 kb on - strand at 3397.478 kb on - strand at 3397.509 kb on + strand at 3397.509 kb on + strand at 3397.509 kb on + strand at 3397.566 kb on + strand at 3397.588 kb on + strand at 3397.724 kb on - strand, within Dsui_3168 at 3397.778 kb on - strand at 3397.911 kb on - strand, within Dsui_3168 at 3398.250 kb on - strand, within Dsui_3168 at 3398.313 kb on - strand, within Dsui_3168 at 3398.355 kb on - strand, within Dsui_3168
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 3,395,251 - +0.7 3,395,400 - -1.7 3,395,517 - Dsui_3167 0.12 -2.1 3,395,517 - Dsui_3167 0.12 -1.7 3,395,606 - Dsui_3167 0.17 -1.1 3,395,647 + Dsui_3167 0.18 -0.3 3,395,657 + Dsui_3167 0.19 +0.7 3,395,660 - Dsui_3167 0.19 +0.7 3,395,660 - Dsui_3167 0.19 -2.1 3,395,665 - Dsui_3167 0.19 -1.6 3,395,925 - Dsui_3167 0.31 -1.6 3,395,975 - Dsui_3167 0.33 -0.9 3,396,067 + -0.9 3,396,137 + -0.9 3,396,266 - Dsui_3167 0.47 -0.9 3,396,371 + +0.7 3,396,373 - Dsui_3167 0.52 +0.3 3,396,422 - Dsui_3167 0.54 -2.9 3,396,422 - Dsui_3167 0.54 -1.5 3,396,422 - Dsui_3167 0.54 -2.2 3,396,470 - -0.3 3,396,473 + -0.3 3,396,481 - Dsui_3167 0.57 -1.3 3,396,625 + -0.3 3,396,631 + -0.3 3,396,750 + -0.9 3,396,825 - Dsui_3167 0.72 -1.6 3,396,873 - Dsui_3167 0.75 +0.7 3,396,919 - Dsui_3167 0.77 -1.9 3,397,007 - Dsui_3167 0.81 -1.6 3,397,007 - Dsui_3167 0.81 -1.9 3,397,148 - Dsui_3167 0.87 -1.8 3,397,312 - -1.7 3,397,380 - -1.7 3,397,386 - +0.7 3,397,392 + -0.3 3,397,450 - +0.7 3,397,478 - -1.7 3,397,478 - -0.6 3,397,509 + -0.9 3,397,509 + -0.3 3,397,509 + +0.7 3,397,566 + -0.9 3,397,588 + +0.7 3,397,724 - Dsui_3168 0.27 -1.5 3,397,778 - +1.7 3,397,911 - Dsui_3168 0.43 +0.3 3,398,250 - Dsui_3168 0.73 -1.5 3,398,313 - Dsui_3168 0.78 +1.1 3,398,355 - Dsui_3168 0.82 -2.1
Or see this region's nucleotide sequence