Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3111 and Dsui_3112 are separated by 10 nucleotides Dsui_3112 and Dsui_3113 overlap by 4 nucleotides Dsui_3113 and Dsui_3114 are separated by 96 nucleotides Dsui_3114 and Dsui_3115 overlap by 14 nucleotides Dsui_3115 and Dsui_3116 overlap by 1 nucleotides
Dsui_3111: Dsui_3111 - hypothetical protein, at 3,333,042 to 3,334,334
_3111
Dsui_3112: Dsui_3112 - hypothetical protein, at 3,334,345 to 3,334,791
_3112
Dsui_3113: Dsui_3113 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,334,788 to 3,337,169
_3113
Dsui_3114: Dsui_3114 - heme/copper-type cytochrome/quinol oxidase, subunit 3, at 3,337,266 to 3,337,868
_3114
Dsui_3115: Dsui_3115 - hypothetical protein, at 3,337,855 to 3,338,169
_3115
Dsui_3116: Dsui_3116 - ATPase family protein associated with various cellular activities (AAA), at 3,338,169 to 3,338,960
_3116
Position (kb)
3334
3335
3336
3337
3338 Strain fitness (log2 ratio)
-2
-1
0
1 at 3333.789 kb on - strand, within Dsui_3111 at 3334.040 kb on + strand, within Dsui_3111 at 3334.067 kb on + strand, within Dsui_3111 at 3334.132 kb on + strand, within Dsui_3111 at 3334.166 kb on - strand at 3334.182 kb on - strand at 3334.231 kb on - strand at 3334.240 kb on + strand at 3334.421 kb on + strand, within Dsui_3112 at 3334.469 kb on + strand, within Dsui_3112 at 3334.514 kb on + strand, within Dsui_3112 at 3334.522 kb on - strand at 3334.580 kb on + strand, within Dsui_3112 at 3334.650 kb on - strand, within Dsui_3112 at 3334.686 kb on + strand, within Dsui_3112 at 3334.741 kb on + strand, within Dsui_3112 at 3334.752 kb on + strand at 3334.752 kb on + strand at 3334.850 kb on - strand at 3334.851 kb on - strand at 3335.200 kb on + strand, within Dsui_3113 at 3335.239 kb on + strand, within Dsui_3113 at 3335.414 kb on + strand, within Dsui_3113 at 3335.463 kb on - strand, within Dsui_3113 at 3335.586 kb on + strand, within Dsui_3113 at 3335.605 kb on + strand, within Dsui_3113 at 3335.733 kb on - strand, within Dsui_3113 at 3335.803 kb on - strand at 3335.803 kb on - strand at 3335.834 kb on + strand, within Dsui_3113 at 3335.850 kb on - strand, within Dsui_3113 at 3335.850 kb on - strand at 3335.852 kb on + strand, within Dsui_3113 at 3335.888 kb on - strand, within Dsui_3113 at 3335.906 kb on - strand at 3335.940 kb on + strand, within Dsui_3113 at 3335.958 kb on + strand, within Dsui_3113 at 3336.137 kb on - strand at 3336.180 kb on - strand, within Dsui_3113 at 3336.241 kb on + strand, within Dsui_3113 at 3336.261 kb on + strand, within Dsui_3113 at 3336.485 kb on - strand, within Dsui_3113 at 3336.487 kb on + strand, within Dsui_3113 at 3336.526 kb on + strand at 3336.628 kb on + strand, within Dsui_3113 at 3336.654 kb on - strand, within Dsui_3113 at 3336.794 kb on - strand, within Dsui_3113 at 3336.895 kb on + strand, within Dsui_3113 at 3336.903 kb on + strand, within Dsui_3113 at 3336.956 kb on + strand at 3336.956 kb on + strand at 3336.991 kb on + strand at 3337.050 kb on + strand at 3337.060 kb on + strand at 3337.164 kb on + strand at 3337.383 kb on + strand, within Dsui_3114 at 3337.413 kb on + strand, within Dsui_3114 at 3337.426 kb on - strand at 3337.445 kb on - strand at 3337.468 kb on - strand at 3337.518 kb on + strand, within Dsui_3114 at 3337.784 kb on - strand, within Dsui_3114 at 3337.825 kb on - strand at 3337.850 kb on + strand at 3337.860 kb on - strand at 3337.965 kb on + strand, within Dsui_3115 at 3338.083 kb on + strand, within Dsui_3115 at 3338.099 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 3,333,789 - Dsui_3111 0.58 +0.7 3,334,040 + Dsui_3111 0.77 -1.3 3,334,067 + Dsui_3111 0.79 +0.7 3,334,132 + Dsui_3111 0.84 -1.3 3,334,166 - +0.7 3,334,182 - +0.7 3,334,231 - -1.3 3,334,240 + -1.7 3,334,421 + Dsui_3112 0.17 -2.4 3,334,469 + Dsui_3112 0.28 -0.3 3,334,514 + Dsui_3112 0.38 -2.2 3,334,522 - -0.3 3,334,580 + Dsui_3112 0.53 -0.3 3,334,650 - Dsui_3112 0.68 -1.3 3,334,686 + Dsui_3112 0.76 +0.7 3,334,741 + Dsui_3112 0.89 -2.3 3,334,752 + -0.3 3,334,752 + -2.3 3,334,850 - -0.3 3,334,851 - +0.7 3,335,200 + Dsui_3113 0.17 +0.7 3,335,239 + Dsui_3113 0.19 -1.6 3,335,414 + Dsui_3113 0.26 -2.0 3,335,463 - Dsui_3113 0.28 -0.3 3,335,586 + Dsui_3113 0.34 -2.6 3,335,605 + Dsui_3113 0.34 -1.3 3,335,733 - Dsui_3113 0.40 +0.7 3,335,803 - +0.7 3,335,803 - -0.3 3,335,834 + Dsui_3113 0.44 -0.3 3,335,850 - Dsui_3113 0.45 +0.7 3,335,850 - -0.3 3,335,852 + Dsui_3113 0.45 -0.8 3,335,888 - Dsui_3113 0.46 -0.3 3,335,906 - +0.7 3,335,940 + Dsui_3113 0.48 -0.3 3,335,958 + Dsui_3113 0.49 -1.4 3,336,137 - -0.3 3,336,180 - Dsui_3113 0.58 +0.7 3,336,241 + Dsui_3113 0.61 +0.2 3,336,261 + Dsui_3113 0.62 -0.6 3,336,485 - Dsui_3113 0.71 +0.7 3,336,487 + Dsui_3113 0.71 -0.8 3,336,526 + +0.7 3,336,628 + Dsui_3113 0.77 -2.7 3,336,654 - Dsui_3113 0.78 -0.3 3,336,794 - Dsui_3113 0.84 +0.7 3,336,895 + Dsui_3113 0.88 +0.7 3,336,903 + Dsui_3113 0.89 +0.7 3,336,956 + -2.7 3,336,956 + -0.8 3,336,991 + -0.8 3,337,050 + -2.3 3,337,060 + +0.7 3,337,164 + -0.3 3,337,383 + Dsui_3114 0.19 -1.8 3,337,413 + Dsui_3114 0.24 -0.3 3,337,426 - -0.3 3,337,445 - -0.3 3,337,468 - +0.7 3,337,518 + Dsui_3114 0.42 -2.3 3,337,784 - Dsui_3114 0.86 -0.3 3,337,825 - -0.3 3,337,850 + +0.7 3,337,860 - -0.8 3,337,965 + Dsui_3115 0.35 -2.4 3,338,083 + Dsui_3115 0.72 -1.3 3,338,099 + +0.7
Or see this region's nucleotide sequence