Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3108 and Dsui_3109 are separated by 198 nucleotides Dsui_3109 and Dsui_3110 are separated by 53 nucleotides Dsui_3110 and Dsui_3111 are separated by 285 nucleotides
Dsui_3108: Dsui_3108 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,327,388 to 3,330,702
_3108
Dsui_3109: Dsui_3109 - cytochrome c, mono- and diheme variants family, at 3,330,901 to 3,331,326
_3109
Dsui_3110: Dsui_3110 - nitric oxide reductase large subunit, at 3,331,380 to 3,332,756
_3110
Dsui_3111: Dsui_3111 - hypothetical protein, at 3,333,042 to 3,334,334
_3111
Position (kb)
3331
3332
3333 Strain fitness (log2 ratio)
-2
-1
0
1 at 3330.384 kb on + strand at 3330.469 kb on + strand at 3330.479 kb on - strand at 3330.482 kb on - strand at 3330.482 kb on - strand at 3330.546 kb on - strand at 3330.596 kb on - strand at 3330.681 kb on - strand at 3330.681 kb on - strand at 3330.704 kb on + strand at 3330.776 kb on - strand at 3330.822 kb on - strand at 3330.822 kb on - strand at 3330.822 kb on - strand at 3330.846 kb on + strand at 3330.849 kb on + strand at 3330.856 kb on + strand at 3330.864 kb on - strand at 3330.884 kb on + strand at 3330.892 kb on - strand at 3330.972 kb on + strand, within Dsui_3109 at 3330.972 kb on + strand, within Dsui_3109 at 3330.980 kb on - strand, within Dsui_3109 at 3330.980 kb on - strand, within Dsui_3109 at 3331.043 kb on - strand at 3331.099 kb on + strand, within Dsui_3109 at 3331.141 kb on + strand, within Dsui_3109 at 3331.187 kb on - strand at 3331.191 kb on + strand, within Dsui_3109 at 3331.199 kb on - strand, within Dsui_3109 at 3331.256 kb on + strand, within Dsui_3109 at 3331.287 kb on + strand at 3331.369 kb on - strand at 3331.400 kb on - strand at 3331.456 kb on - strand at 3331.461 kb on - strand at 3331.470 kb on + strand at 3331.535 kb on - strand, within Dsui_3110 at 3331.537 kb on + strand, within Dsui_3110 at 3331.555 kb on - strand at 3331.622 kb on + strand, within Dsui_3110 at 3331.627 kb on + strand, within Dsui_3110 at 3331.627 kb on + strand, within Dsui_3110 at 3331.860 kb on + strand, within Dsui_3110 at 3331.933 kb on + strand, within Dsui_3110 at 3331.933 kb on + strand at 3331.979 kb on + strand, within Dsui_3110 at 3331.985 kb on + strand, within Dsui_3110 at 3331.987 kb on - strand at 3332.036 kb on + strand, within Dsui_3110 at 3332.044 kb on - strand, within Dsui_3110 at 3332.049 kb on + strand, within Dsui_3110 at 3332.191 kb on + strand, within Dsui_3110 at 3332.355 kb on - strand at 3332.355 kb on - strand, within Dsui_3110 at 3332.419 kb on + strand, within Dsui_3110 at 3332.461 kb on + strand, within Dsui_3110 at 3332.529 kb on - strand at 3332.616 kb on + strand, within Dsui_3110 at 3332.647 kb on - strand at 3332.738 kb on + strand at 3332.783 kb on + strand at 3332.907 kb on - strand at 3332.959 kb on - strand at 3333.017 kb on + strand at 3333.040 kb on - strand at 3333.063 kb on + strand at 3333.071 kb on - strand at 3333.071 kb on - strand at 3333.071 kb on - strand at 3333.105 kb on - strand at 3333.234 kb on + strand, within Dsui_3111 at 3333.371 kb on + strand, within Dsui_3111 at 3333.371 kb on + strand, within Dsui_3111 at 3333.437 kb on - strand at 3333.469 kb on + strand, within Dsui_3111 at 3333.477 kb on - strand at 3333.538 kb on + strand, within Dsui_3111 at 3333.538 kb on + strand, within Dsui_3111 at 3333.541 kb on - strand, within Dsui_3111 at 3333.651 kb on + strand, within Dsui_3111 at 3333.682 kb on + strand, within Dsui_3111 at 3333.694 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 3,330,384 + -0.2 3,330,469 + -0.2 3,330,479 - -0.4 3,330,482 - -0.5 3,330,482 - -0.2 3,330,546 - -0.6 3,330,596 - -0.3 3,330,681 - -0.4 3,330,681 - -0.3 3,330,704 + +0.8 3,330,776 - -0.2 3,330,822 - -0.2 3,330,822 - +0.8 3,330,822 - +0.8 3,330,846 + +0.8 3,330,849 + +0.8 3,330,856 + +0.8 3,330,864 - -1.2 3,330,884 + -0.2 3,330,892 - -0.8 3,330,972 + Dsui_3109 0.17 +0.8 3,330,972 + Dsui_3109 0.17 -0.2 3,330,980 - Dsui_3109 0.19 -0.2 3,330,980 - Dsui_3109 0.19 -0.8 3,331,043 - +0.8 3,331,099 + Dsui_3109 0.46 -0.2 3,331,141 + Dsui_3109 0.56 -0.2 3,331,187 - +0.8 3,331,191 + Dsui_3109 0.68 -0.8 3,331,199 - Dsui_3109 0.70 -1.6 3,331,256 + Dsui_3109 0.83 -0.8 3,331,287 + -0.8 3,331,369 - +0.8 3,331,400 - -0.2 3,331,456 - -0.8 3,331,461 - +0.8 3,331,470 + -0.2 3,331,535 - Dsui_3110 0.11 -0.8 3,331,537 + Dsui_3110 0.11 +0.8 3,331,555 - +0.8 3,331,622 + Dsui_3110 0.18 +0.8 3,331,627 + Dsui_3110 0.18 -1.2 3,331,627 + Dsui_3110 0.18 +0.8 3,331,860 + Dsui_3110 0.35 -0.8 3,331,933 + Dsui_3110 0.40 -1.6 3,331,933 + +0.8 3,331,979 + Dsui_3110 0.44 -0.2 3,331,985 + Dsui_3110 0.44 -1.2 3,331,987 - -0.2 3,332,036 + Dsui_3110 0.48 -0.2 3,332,044 - Dsui_3110 0.48 +0.8 3,332,049 + Dsui_3110 0.49 +0.8 3,332,191 + Dsui_3110 0.59 +0.8 3,332,355 - -0.2 3,332,355 - Dsui_3110 0.71 -1.8 3,332,419 + Dsui_3110 0.75 +0.8 3,332,461 + Dsui_3110 0.79 -0.2 3,332,529 - -0.8 3,332,616 + Dsui_3110 0.90 -1.2 3,332,647 - -0.8 3,332,738 + +0.8 3,332,783 + -1.2 3,332,907 - -0.3 3,332,959 - +0.7 3,333,017 + +0.5 3,333,040 - -0.3 3,333,063 + -0.8 3,333,071 - -1.6 3,333,071 - +0.7 3,333,071 - +0.7 3,333,105 - +0.7 3,333,234 + Dsui_3111 0.15 -0.6 3,333,371 + Dsui_3111 0.25 -0.3 3,333,371 + Dsui_3111 0.25 +1.6 3,333,437 - -0.8 3,333,469 + Dsui_3111 0.33 +0.2 3,333,477 - -0.8 3,333,538 + Dsui_3111 0.38 +0.7 3,333,538 + Dsui_3111 0.38 -0.3 3,333,541 - Dsui_3111 0.39 -0.3 3,333,651 + Dsui_3111 0.47 +0.0 3,333,682 + Dsui_3111 0.49 -0.8 3,333,694 - +0.7
Or see this region's nucleotide sequence