Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3025 and Dsui_3026 are separated by 110 nucleotides Dsui_3026 and Dsui_3027 overlap by 4 nucleotides Dsui_3027 and Dsui_3028 are separated by 12 nucleotides Dsui_3028 and Dsui_3029 overlap by 4 nucleotides
Dsui_3025: Dsui_3025 - hypothetical protein, at 3,236,864 to 3,237,610
_3025
Dsui_3026: Dsui_3026 - hydrogenase maturation protease, at 3,237,721 to 3,238,218
_3026
Dsui_3027: Dsui_3027 - coenzyme F420-reducing hydrogenase, alpha subunit, at 3,238,215 to 3,239,675
_3027
Dsui_3028: Dsui_3028 - coenzyme F420-reducing hydrogenase, gamma subunit, at 3,239,688 to 3,240,245
_3028
Dsui_3029: Dsui_3029 - NADH:ubiquinone oxidoreductase chain G-like protein, at 3,240,242 to 3,240,955
_3029
Position (kb)
3238
3239
3240 Strain fitness (log2 ratio)
-2
-1
0
1 at 3237.269 kb on - strand, within Dsui_3025 at 3237.311 kb on + strand at 3237.377 kb on + strand at 3237.613 kb on - strand at 3237.823 kb on - strand, within Dsui_3026 at 3237.982 kb on - strand, within Dsui_3026 at 3238.066 kb on - strand, within Dsui_3026 at 3238.228 kb on + strand at 3238.291 kb on - strand at 3238.297 kb on - strand at 3238.524 kb on - strand, within Dsui_3027 at 3238.777 kb on - strand, within Dsui_3027 at 3238.953 kb on - strand, within Dsui_3027 at 3238.978 kb on - strand, within Dsui_3027 at 3238.994 kb on + strand, within Dsui_3027 at 3239.002 kb on - strand, within Dsui_3027 at 3239.034 kb on - strand, within Dsui_3027 at 3239.060 kb on - strand, within Dsui_3027 at 3239.259 kb on - strand, within Dsui_3027 at 3239.417 kb on - strand, within Dsui_3027 at 3239.599 kb on + strand at 3239.600 kb on - strand at 3239.832 kb on - strand, within Dsui_3028 at 3239.913 kb on - strand, within Dsui_3028 at 3239.939 kb on - strand, within Dsui_3028 at 3240.113 kb on - strand, within Dsui_3028 at 3240.364 kb on - strand, within Dsui_3029 at 3240.414 kb on + strand, within Dsui_3029
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 3,237,269 - Dsui_3025 0.54 +0.7 3,237,311 + +0.7 3,237,377 + +0.7 3,237,613 - +0.7 3,237,823 - Dsui_3026 0.20 -1.8 3,237,982 - Dsui_3026 0.52 -0.3 3,238,066 - Dsui_3026 0.69 -0.3 3,238,228 + -0.3 3,238,291 - +0.7 3,238,297 - -0.3 3,238,524 - Dsui_3027 0.21 -0.3 3,238,777 - Dsui_3027 0.38 -0.9 3,238,953 - Dsui_3027 0.51 +0.7 3,238,978 - Dsui_3027 0.52 -1.3 3,238,994 + Dsui_3027 0.53 -1.3 3,239,002 - Dsui_3027 0.54 -0.3 3,239,034 - Dsui_3027 0.56 +0.7 3,239,060 - Dsui_3027 0.58 +0.7 3,239,259 - Dsui_3027 0.71 -0.9 3,239,417 - Dsui_3027 0.82 -0.9 3,239,599 + -1.9 3,239,600 - -0.3 3,239,832 - Dsui_3028 0.26 +0.7 3,239,913 - Dsui_3028 0.40 +0.7 3,239,939 - Dsui_3028 0.45 +0.7 3,240,113 - Dsui_3028 0.76 +0.7 3,240,364 - Dsui_3029 0.17 +0.7 3,240,414 + Dsui_3029 0.24 -0.9
Or see this region's nucleotide sequence