Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2989 and Dsui_2990 are separated by 226 nucleotides Dsui_2990 and Dsui_2991 are separated by 2 nucleotides
Dsui_2989: Dsui_2989 - PAS domain S-box, at 3,195,656 to 3,197,752
_2989
Dsui_2990: Dsui_2990 - MoxR-like ATPase, at 3,197,979 to 3,198,827
_2990
Dsui_2991: Dsui_2991 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,198,830 to 3,201,253
_2991
Position (kb)
3197
3198
3199 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3196.997 kb on - strand, within Dsui_2989 at 3196.997 kb on - strand, within Dsui_2989 at 3197.447 kb on - strand, within Dsui_2989 at 3197.462 kb on + strand, within Dsui_2989 at 3197.530 kb on + strand at 3197.538 kb on - strand, within Dsui_2989 at 3197.561 kb on - strand at 3197.590 kb on + strand at 3197.598 kb on - strand at 3197.598 kb on - strand at 3197.604 kb on - strand at 3197.609 kb on - strand at 3197.628 kb on + strand at 3197.709 kb on - strand at 3197.774 kb on - strand at 3197.822 kb on - strand at 3197.823 kb on - strand at 3197.823 kb on - strand at 3197.823 kb on - strand at 3197.873 kb on + strand at 3198.044 kb on - strand at 3198.069 kb on + strand, within Dsui_2990 at 3198.074 kb on + strand, within Dsui_2990 at 3198.077 kb on - strand at 3198.130 kb on + strand, within Dsui_2990 at 3198.138 kb on - strand, within Dsui_2990 at 3198.189 kb on - strand at 3198.199 kb on + strand, within Dsui_2990 at 3198.315 kb on - strand at 3198.466 kb on + strand, within Dsui_2990 at 3198.481 kb on + strand, within Dsui_2990 at 3198.552 kb on + strand, within Dsui_2990 at 3198.575 kb on + strand, within Dsui_2990 at 3198.590 kb on - strand, within Dsui_2990 at 3198.603 kb on - strand at 3198.660 kb on - strand, within Dsui_2990 at 3198.721 kb on + strand, within Dsui_2990 at 3198.749 kb on + strand at 3198.759 kb on + strand at 3198.761 kb on + strand at 3198.762 kb on - strand at 3198.985 kb on + strand at 3198.985 kb on + strand at 3198.988 kb on - strand at 3198.993 kb on - strand at 3199.011 kb on + strand at 3199.288 kb on + strand, within Dsui_2991 at 3199.288 kb on + strand, within Dsui_2991 at 3199.316 kb on + strand, within Dsui_2991 at 3199.347 kb on - strand at 3199.382 kb on + strand, within Dsui_2991 at 3199.541 kb on - strand at 3199.542 kb on + strand, within Dsui_2991 at 3199.614 kb on + strand, within Dsui_2991
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 3,196,997 - Dsui_2989 0.64 -0.0 3,196,997 - Dsui_2989 0.64 +0.1 3,197,447 - Dsui_2989 0.85 -0.0 3,197,462 + Dsui_2989 0.86 -0.2 3,197,530 + -1.2 3,197,538 - Dsui_2989 0.90 -0.6 3,197,561 - -1.4 3,197,590 + -0.2 3,197,598 - -0.6 3,197,598 - -0.1 3,197,604 - -0.8 3,197,609 - +0.5 3,197,628 + +0.8 3,197,709 - +0.8 3,197,774 - -0.5 3,197,822 - -0.2 3,197,823 - -0.2 3,197,823 - -0.2 3,197,823 - +0.8 3,197,873 + -0.2 3,198,044 - +0.8 3,198,069 + Dsui_2990 0.11 -0.8 3,198,074 + Dsui_2990 0.11 -1.8 3,198,077 - -0.8 3,198,130 + Dsui_2990 0.18 -1.2 3,198,138 - Dsui_2990 0.19 +0.8 3,198,189 - +0.8 3,198,199 + Dsui_2990 0.26 +0.8 3,198,315 - +0.8 3,198,466 + Dsui_2990 0.57 -2.6 3,198,481 + Dsui_2990 0.59 -0.2 3,198,552 + Dsui_2990 0.67 -1.7 3,198,575 + Dsui_2990 0.70 -0.4 3,198,590 - Dsui_2990 0.72 -0.2 3,198,603 - +0.8 3,198,660 - Dsui_2990 0.80 -1.2 3,198,721 + Dsui_2990 0.87 -1.0 3,198,749 + -1.8 3,198,759 + -0.6 3,198,761 + +0.8 3,198,762 - -0.2 3,198,985 + -1.6 3,198,985 + -0.1 3,198,988 - -0.2 3,198,993 - -0.2 3,199,011 + -1.2 3,199,288 + Dsui_2991 0.19 -1.8 3,199,288 + Dsui_2991 0.19 -1.7 3,199,316 + Dsui_2991 0.20 -0.2 3,199,347 - +0.8 3,199,382 + Dsui_2991 0.23 -1.2 3,199,541 - +0.8 3,199,542 + Dsui_2991 0.29 -2.9 3,199,614 + Dsui_2991 0.32 -0.8
Or see this region's nucleotide sequence